RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 ARL6IP6Q8N6S5 226 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 FBXO27Q8NI29 283 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 LINC01599Q8WXQ3 324 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 RPGRQ92834 1020 aaKnown RBP6.32□□□□□ -1.4
VPS41-209ENST00000457055 CENPTQ96BT3 561 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 RSRP1Q9BUV0 290 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 TSPYL1Q9H0U9 437 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 ZNF552Q9H707 407 aaPredicted RBP6.32□□□□□ -1.4
VPS41-209ENST00000457055 MRPS23Q9Y3D9 190 aaKnown RBP6.32□□□□□ -1.4
VPS41-209ENST00000457055 FANCAO15360 1455 aa6.32□□□□□ -1.4
VPS41-209ENST00000457055 SRCAPQ6ZRS2 3230 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 MINDY4BA8MYZ0 360 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 CHL1O00533 1208 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 FIBPO43427 364 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 TOM1O60784 492 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 USP2O75604 605 aaPredicted RBP6.31□□□□□ -1.4
VPS41-209ENST00000457055 CCDC172P0C7W6 258 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 RPL10P27635 214 aaKnown RBP6.31□□□□□ -1.4
VPS41-209ENST00000457055 CTSWP56202 376 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 GEMIN4P57678 1058 aaKnown RBP6.31□□□□□ -1.4
VPS41-209ENST00000457055 RNF4P78317 190 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 ARID5AQ03989 594 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 MRPL58Q14197 206 aaKnown RBP6.31□□□□□ -1.4
VPS41-209ENST00000457055 TOMM20Q15388 145 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 GRAMD1BQ3KR37 738 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 ALFQ53S48 1182 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 CTR9Q6PD62 1173 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 RNF111Q6ZNA4 994 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 DAAM2Q86T65 1068 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 METTL16Q86W50 562 aaKnown RBP6.31□□□□□ -1.4
VPS41-209ENST00000457055 SIRT2Q8IXJ6 389 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 TMEM87AQ8NBN3 555 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 SYTL5Q8TDW5 730 aaPredicted RBP6.31□□□□□ -1.4
VPS41-209ENST00000457055 SHISA4Q96DD7 197 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 VMP1Q96GC9 406 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 PAWRQ96IZ0 340 aaKnown RBP6.31□□□□□ -1.4
VPS41-209ENST00000457055 G6PC3Q9BUM1 346 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 SGPP1Q9BX95 441 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 HDAC8Q9BY41 377 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 DHX36Q9H2U1 1008 aaKnown RBP6.31□□□□□ -1.4
VPS41-209ENST00000457055 CHST12Q9NRB3 414 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 HOMER2Q9NSB8 354 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 CNOT6Q9ULM6 557 aaKnown RBP6.31□□□□□ -1.4
VPS41-209ENST00000457055 ABCA9Q8IUA7 1624 aa6.31□□□□□ -1.4
VPS41-209ENST00000457055 SUPT6HQ7KZ85 1726 aaKnown RBP6.3□□□□□ -1.4
VPS41-209ENST00000457055 CAMSAP1Q5T5Y3 1602 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 ALKQ9UM73 1620 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 OR14I1A6ND48 311 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 RGS13O14921 159 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 TLR3O15455 904 aaKnown RBP6.3□□□□□ -1.4
VPS41-209ENST00000457055 CCP110O43303 1012 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 ORC4O43929 436 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 DIAPH1O60610 1272 aaKnown RBP6.3□□□□□ -1.4
VPS41-209ENST00000457055 SH3BGRP55822 239 aaPredicted RBP6.3□□□□□ -1.4
VPS41-209ENST00000457055 CCT2P78371 535 aaKnown RBP6.3□□□□□ -1.4
VPS41-209ENST00000457055 ADGRF1Q5T601 910 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 ARMC3Q5W041 872 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 TTLL5Q6EMB2 1281 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 FAM196AQ6ZSG2 479 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 WAPLQ7Z5K2 1190 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 BRSK2Q8IWQ3 736 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 IFNL3Q8IZI9 196 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 MIGA1Q8NAN2 632 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 SMCR8Q8TEV9 937 aaPredicted RBP6.3□□□□□ -1.4
VPS41-209ENST00000457055 ERCC4Q92889 916 aaPredicted RBP6.3□□□□□ -1.4
VPS41-209ENST00000457055 VWCEQ96DN2 955 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 CDK5RAP3Q96JB5 506 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 MAP3K14Q99558 947 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 KRTAP4-11Q9BYQ6 195 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 ACBD3Q9H3P7 528 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 GCM1Q9NP62 436 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 USP25Q9UHP3 1055 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 ZMYM5Q9UJ78 669 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 RABL2BQ9UNT1 228 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 ZNF281Q9Y2X9 895 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 PPP2R3BQ9Y5P8 575 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 NCOA1Q15788 1441 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 ARHGEF12Q9NZN5 1544 aa6.3□□□□□ -1.4
VPS41-209ENST00000457055 SSU72P8A0A1W2PR75 194 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 NOTOA8MTQ0 251 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 RFXAPO00287 272 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 LETM1O95202 739 aaPredicted RBP6.29□□□□□ -1.4
VPS41-209ENST00000457055 RAG1P15918 1043 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 HOXA5P20719 270 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 GARTP22102 1010 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 PSMA3P25788 255 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 TSPAN7P41732 249 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 DMTNQ08495 405 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 CWF19L2Q2TBE0 894 aaKnown RBP6.29□□□□□ -1.4
VPS41-209ENST00000457055 ZNF385BQ569K4 471 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 PLEKHG4Q58EX7 1191 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 DNAJC21Q5F1R6 531 aaKnown RBP6.29□□□□□ -1.4
VPS41-209ENST00000457055 ARSHQ5FYA8 562 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 SPECC1Q5M775 1068 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 AKNAQ7Z591 1439 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 NLRX1Q86UT6 975 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 RAVER1Q8IY67 606 aaKnown RBP6.29□□□□□ -1.4
VPS41-209ENST00000457055 SAMD14Q8IZD0 417 aaPredicted RBP6.29□□□□□ -1.4
VPS41-209ENST00000457055 RNF34Q969K3 372 aa6.29□□□□□ -1.4
VPS41-209ENST00000457055 ZNF496Q96IT1 587 aaPredicted RBP6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms