RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 OLFML1Q6UWY5 402 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 CYP26C1Q6V0L0 522 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 ARHGAP27Q6ZUM4 889 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 TTC6Q86TZ1 520 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 FAM178BQ8IXR5 827 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 SLC7A5P1Q8MH63 180 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 OR13H1Q8NG92 308 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 STK35Q8TDR2 534 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 MIEF2Q96C03 454 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 IRX2Q9BZI1 471 aaPredicted RBP5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 CEP44Q9C0F1 390 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 TAOK3Q9H2K8 898 aa5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 PHRF1Q9P1Y6 1649 aaKnown RBP5.41□□□□□ -1.54
CCDC88A-209ENST00000456975 AKAP12Q02952 1782 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 A6NCN8 305 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 LRRC10BA6NIK2 292 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 TSPAN6O43657 245 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 INMTO95050 263 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 MYL3P08590 195 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 RARAP10276 462 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 NCAM1P13591 858 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 IDEP14735 1019 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 PRPHP41219 470 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 UBA7P41226 1012 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 CDK8P49336 464 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 USP11P51784 963 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 NUCB2P80303 420 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 KCNC4Q03721 635 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 MRPL28Q13084 256 aaKnown RBP5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 MPP2Q14168 576 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 ZYXQ15942 572 aaKnown RBP5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 NFE2Q16621 373 aaPredicted RBP5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 SMUG1Q53HV7 270 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 FKBP15Q5T1M5 1219 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 FOXB2Q5VYV0 432 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 LEKR1Q6ZMV7 388 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 RAB44Q7Z6P3 723 aaPredicted RBP5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 SUN5Q8TC36 379 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 PGBD4Q96DM1 585 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 DHTKD1Q96HY7 919 aaPredicted RBP5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 RBM17Q96I25 401 aaKnown RBP5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 SMAD5Q99717 465 aaKnown RBP5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 LRRC3Q9BY71 257 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 KRTAP3-3Q9BYR6 98 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 KRTAP3-2Q9BYR7 98 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 POGKQ9P215 609 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 FBXL5Q9UKA1 691 aa5.4□□□□□ -1.54
CCDC88A-209ENST00000456975 ANKARQ7Z5J8 1434 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 ARHGEF10O15013 1369 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 RNF123Q5XPI4 1314 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 A0A1B0GUL7 405 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 C2orf81A6NN90 581 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 UPK3BL1B0FP48 263 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 RASA4BC9J798 803 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 UPK3BL2E5RIL1 263 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 FOXD2O60548 495 aaPredicted RBP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 CILPO75339 1184 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 SNUPNO95149 360 aaKnown RBP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 SCGB1D2O95969 90 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 GNAT2P19087 354 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 CHMLP26374 656 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 RDXP35241 583 aaKnown RBP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 MRE11P49959 708 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 RAB27AP51159 221 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 COPAP53621 1224 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 CASP7P55210 303 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 ADCY1Q08828 1119 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 PABPC4Q13310 644 aaKnown RBP eCLIP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 MPP3Q13368 585 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 CLPPQ16740 277 aaPredicted RBP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 KIAA0753Q2KHM9 967 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 GNPTABQ3T906 1256 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 FAM133BQ5BKY9 247 aaKnown RBP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 LCE2DQ5TA82 110 aaPredicted RBP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 SASS6Q6UVJ0 657 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 KRT28Q7Z3Y7 464 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 STRA8Q7Z7C7 330 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 ATP11CQ8NB49 1132 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 RPGRQ92834 1020 aaKnown RBP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 NINJ1Q92982 152 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 MFSD3Q96ES6 412 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 PLEKHA5Q9HAU0 1116 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 SPATS2LQ9NUQ6 558 aaKnown RBP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 BTG4Q9NY30 223 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 PPP1R9AQ9ULJ8 1098 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 PLAAQ9Y263 795 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 POLR3KQ9Y2Y1 108 aaPredicted RBP5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 WNK3Q9BYP7 1800 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 SHANK3Q9BYB0 1731 aa5.4□□□□□ -1.55
CCDC88A-209ENST00000456975 A0A096LPE4 126 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 A0A1W2PPZ6 126 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 FRAT2O75474 233 aaPredicted RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 NEBLO76041 1014 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 PYGLP06737 847 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 TRIM21P19474 475 aaKnown RBP5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 BMP6P22004 513 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 GPC1P35052 558 aa5.39□□□□□ -1.55
CCDC88A-209ENST00000456975 GGCXP38435 758 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms