RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-205ENST00000452322 ZNF174Q15697 407 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 DHX37Q8IY37 1157 aaKnown RBP13.46□□□□□ -0.25
LINC00339-205ENST00000452322 U2AF1L4Q8WU68 220 aaKnown RBP13.46□□□□□ -0.25
LINC00339-205ENST00000452322 SLC5A5Q92911 643 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 FAM20AQ96MK3 541 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 SDF4Q9BRK5 362 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 CRISPLD2Q9H0B8 497 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 AP5M1Q9H0R1 490 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 MLXIPQ9HAP2 919 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 SPC25Q9HBM1 224 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.46□□□□□ -0.25
LINC00339-205ENST00000452322 TBC1D22BQ9NU19 505 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 PKD2L1Q9P0L9 805 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 OGDHLQ9ULD0 1010 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 CIZ1Q9ULV3 898 aaPredicted RBP13.46□□□□□ -0.25
LINC00339-205ENST00000452322 ZDHHC9Q9Y397 364 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 PCDHB6Q9Y5E3 794 aa13.46□□□□□ -0.25
LINC00339-205ENST00000452322 MYH15Q9Y2K3 1946 aa13.46□□□□□ -0.26
LINC00339-205ENST00000452322 DYNC1LI2O43237 492 aaPredicted RBP13.45□□□□□ -0.26
LINC00339-205ENST00000452322 PTGS1P23219 599 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 CALCRLQ16602 461 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 FOXD4L5Q5VV16 416 aaPredicted RBP13.45□□□□□ -0.26
LINC00339-205ENST00000452322 CYFIP1Q7L576 1253 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 SLFN12Q8IYM2 578 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 TNS4Q8IZW8 715 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 FOXD4L4Q8WXT5 416 aaPredicted RBP13.45□□□□□ -0.26
LINC00339-205ENST00000452322 ABHD8Q96I13 439 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 RIT2Q99578 217 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 JPH1Q9HDC5 661 aaPredicted RBP13.45□□□□□ -0.26
LINC00339-205ENST00000452322 DOCK5Q9H7D0 1870 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 POTEFA5A3E0 1075 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 A6NJR5 290 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 LAD1O00515 517 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 CTAGE5O15320 804 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 DHX15O43143 795 aaKnown RBP13.45□□□□□ -0.26
LINC00339-205ENST00000452322 PSMD10O75832 226 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 BAG4O95429 457 aaKnown RBP13.45□□□□□ -0.26
LINC00339-205ENST00000452322 BMP15O95972 392 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 PGK1P00558 417 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 C6orf222P0C671 652 aaPredicted RBP13.45□□□□□ -0.26
LINC00339-205ENST00000452322 CST5P28325 142 aaPredicted RBP13.45□□□□□ -0.26
LINC00339-205ENST00000452322 CPT1AP50416 773 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 HSDL1Q3SXM5 330 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 BRDTQ58F21 947 aaPredicted RBP13.45□□□□□ -0.26
LINC00339-205ENST00000452322 LRCH2Q5VUJ6 765 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 FAM173BQ6P4H8 233 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 RNF180Q86T96 592 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 ARRDC4Q8NCT1 418 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 KLHDC9Q8NEP7 349 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 PPTC7Q8NI37 304 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 HAS1Q92839 578 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 SPATA33Q96N06 139 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 MTMR9Q96QG7 549 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 TEKT3Q9BXF9 490 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 TMEM60Q9H2L4 133 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 BCAS3Q9H6U6 928 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 SLC9A2Q9UBY0 812 aa13.45□□□□□ -0.26
LINC00339-205ENST00000452322 NOP56O00567 594 aaKnown RBP13.44□□□□□ -0.26
LINC00339-205ENST00000452322 MARCH6O60337 910 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 SORBS3O60504 671 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 GAS7O60861 476 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 MMP3P08254 477 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 OR52Z1P0C646 297 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 KRT76Q01546 638 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 PTGDRQ13258 359 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 LRRC41Q15345 812 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 FSCN1Q16658 493 aaKnown RBP13.44□□□□□ -0.26
LINC00339-205ENST00000452322 C4orf32Q8N8J7 132 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 AFG1LQ8WV93 481 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 ZNF396Q96N95 335 aaPredicted RBP13.44□□□□□ -0.26
LINC00339-205ENST00000452322 UIMC1Q96RL1 719 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 TCEAL9Q9UHQ7 104 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 CEP131Q9UPN4 1083 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 ATP6V1DQ9Y5K8 247 aa13.44□□□□□ -0.26
LINC00339-205ENST00000452322 ELP1O95163 1332 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 KIAA0100Q14667 2235 aaKnown RBP13.43□□□□□ -0.26
LINC00339-205ENST00000452322 MYADML2A6NDP7 307 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 DDX39AO00148 427 aaKnown RBP13.43□□□□□ -0.26
LINC00339-205ENST00000452322 DNM1LO00429 736 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 ZEB2O60315 1214 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 TFRCP02786 760 aaKnown RBP13.43□□□□□ -0.26
LINC00339-205ENST00000452322 HOXD8P13378 290 aaPredicted RBP13.43□□□□□ -0.26
LINC00339-205ENST00000452322 PRPHP41219 470 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 ATP2C1P98194 919 aaPredicted RBP13.43□□□□□ -0.26
LINC00339-205ENST00000452322 SF3A1Q15459 793 aaKnown RBP13.43□□□□□ -0.26
LINC00339-205ENST00000452322 GNASQ5JWF2 1037 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 ATL3Q6DD88 541 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 CCSAPQ6IQ19 270 aaPredicted RBP13.43□□□□□ -0.26
LINC00339-205ENST00000452322 ZNF746Q6NUN9 644 aaPredicted RBP13.43□□□□□ -0.26
LINC00339-205ENST00000452322 B3GNT9Q6UX72 402 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 ANKLE1Q8NAG6 615 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 PCSK9Q8NBP7 692 aaKnown RBP13.43□□□□□ -0.26
LINC00339-205ENST00000452322 GJA10Q969M2 543 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 USP28Q96RU2 1077 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 GPR20Q99678 358 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 TSEN34Q9BSV6 310 aaKnown RBP13.43□□□□□ -0.26
LINC00339-205ENST00000452322 POLR3EQ9NVU0 708 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 VAV3Q9UKW4 847 aa13.43□□□□□ -0.26
LINC00339-205ENST00000452322 MOXD2PA6NHM9 499 aa13.42□□□□□ -0.26
LINC00339-205ENST00000452322 PPFIA4O75335 1185 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms