RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ASB2Q96Q27 587 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 RAD9AQ99638 391 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 IL25Q9H293 177 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 YBX2Q9Y2T7 364 aaKnown RBP8.15□□□□□ -1.1
VPS41-208ENST00000448833 RBM8AQ9Y5S9 174 aaKnown RBP8.15□□□□□ -1.1
VPS41-208ENST00000448833 SLC12A7Q9Y666 1083 aa8.15□□□□□ -1.1
VPS41-208ENST00000448833 REV3LO60673 3130 aa8.15□□□□□ -1.11
VPS41-208ENST00000448833 DOCK5Q9H7D0 1870 aa8.15□□□□□ -1.11
VPS41-208ENST00000448833 VCANP13611 3396 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 MICAL3Q7RTP6 2002 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 FRMPD4Q14CM0 1322 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 C17orf102A2RUQ5 167 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 RSPH10B2B2RC85 870 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 CYTH3O43739 400 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 RGS20O76081 388 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 CA3P07451 260 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 HMGB1P09429 215 aaKnown RBP8.14□□□□□ -1.11
VPS41-208ENST00000448833 RSPH10BP0C881 870 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 FAM43BQ6ZT52 329 aaPredicted RBP8.14□□□□□ -1.11
VPS41-208ENST00000448833 SERINC5Q86VE9 423 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 MB21D2Q8IYB1 491 aaPredicted RBP8.14□□□□□ -1.11
VPS41-208ENST00000448833 ATP6V0A1Q93050 837 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 VWCEQ96DN2 955 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 INPP4AQ96PE3 977 aaPredicted RBP8.14□□□□□ -1.11
VPS41-208ENST00000448833 GLT8D2Q9H1C3 349 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 PSTPIP2Q9H939 334 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 LY9Q9HBG7 655 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 COG5Q9UP83 839 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 INSL6Q9Y581 213 aa8.14□□□□□ -1.11
VPS41-208ENST00000448833 SIP14410 1827 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 NRCAMQ92823 1304 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 SPDYE3A6NKU9 549 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 TNFRSF10AO00220 468 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 LGR5O75473 907 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 AMHP03971 560 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 ZNF286BP0CG31 522 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 UBA1P22314 1058 aaKnown RBP8.13□□□□□ -1.11
VPS41-208ENST00000448833 THPOP40225 353 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 WDR5P61964 334 aaKnown RBP8.13□□□□□ -1.11
VPS41-208ENST00000448833 MRPS9P82933 396 aaKnown RBP8.13□□□□□ -1.11
VPS41-208ENST00000448833 SP2Q02086 613 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 TAP1Q03518 808 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 ADGRE1Q14246 886 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 KRT32Q14532 448 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 NECTIN1Q15223 517 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 CCDC85BQ15834 202 aaPredicted RBP8.13□□□□□ -1.11
VPS41-208ENST00000448833 BMP2KLQ5H9B9 411 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 CENPQQ7L2Z9 268 aaPredicted RBP8.13□□□□□ -1.11
VPS41-208ENST00000448833 RSPH3Q86UC2 560 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 FANCBQ8NB91 859 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 SEPT8Q92599 483 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 APBB2Q92870 758 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 GPRASP2Q96D09 838 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 CTAGE1Q96RT6 745 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 ESYT1Q9BSJ8 1104 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 C16orf70Q9BSU1 422 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 ANO2Q9NQ90 1003 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 RBM28Q9NW13 759 aaKnown RBP8.13□□□□□ -1.11
VPS41-208ENST00000448833 PTPRSQ13332 1948 aa8.13□□□□□ -1.11
VPS41-208ENST00000448833 MYH9P35579 1960 aaKnown RBP8.12□□□□□ -1.11
VPS41-208ENST00000448833 hCG_1984214I3L0E3 225 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 SH2B2O14492 632 aaPredicted RBP8.12□□□□□ -1.11
VPS41-208ENST00000448833 MEIS2O14770 477 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 SLC27A2O14975 620 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 NBNO60934 754 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 GJB5O95377 273 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 FOSP01100 380 aaPredicted RBP8.12□□□□□ -1.11
VPS41-208ENST00000448833 LGALS2P05162 132 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 SMIM10L2AP0DMW4 78 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 SMIM10L2BP0DMW5 78 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 MYOGP15173 224 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 ANTXR2P58335 489 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 SKIV2LQ15477 1246 aaKnown RBP8.12□□□□□ -1.11
VPS41-208ENST00000448833 ZNF618Q5T7W0 954 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 CREB3L3Q68CJ9 461 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 MCTP2Q6DN12 878 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 TAF2Q6P1X5 1199 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 POTEGQ6S5H5 508 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 CYFIP1Q7L576 1253 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 SGMS1Q86VZ5 419 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 ZNF713Q8N859 430 aaPredicted RBP8.12□□□□□ -1.11
VPS41-208ENST00000448833 USP38Q8NB14 1042 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 IL31RAQ8NI17 732 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 PIBF1Q8WXW3 757 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 ARNTL2Q8WYA1 636 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 SEPT1Q8WYJ6 367 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 DHX38Q92620 1227 aaKnown RBP8.12□□□□□ -1.11
VPS41-208ENST00000448833 SAMD11Q96NU1 681 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 TGS1Q96RS0 853 aaKnown RBP8.12□□□□□ -1.11
VPS41-208ENST00000448833 GPR20Q99678 358 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 LSG1Q9H089 658 aaKnown RBP8.12□□□□□ -1.11
VPS41-208ENST00000448833 RNPEPQ9H4A4 650 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 SMARCAD1Q9H4L7 1026 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 PRDM6Q9NQX0 595 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 ERAP1Q9NZ08 941 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 RTEL1Q9NZ71 1219 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 MTCH2Q9Y6C9 303 aa8.12□□□□□ -1.11
VPS41-208ENST00000448833 RALGAPA2Q2PPJ7 1873 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 CCDC196A0A1B0GTZ2 297 aa8.11□□□□□ -1.11
VPS41-208ENST00000448833 HOXC8P31273 242 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms