RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SAMSN1Q9NSI8 373 aaKnown RBP8.12□□□□□ -1.11
SYNE1-213ENST00000448038 AGTPBP1Q9UPW5 1226 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 FAM205AQ6ZU69 1335 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 PP2D1A8MPX8 630 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 E9PMD0 336 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 DYNC1I1O14576 645 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 SRGAP2CP0DJJ0 459 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 CASP1P29466 404 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 COPB2P35606 906 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 PEX3P56589 373 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 MAN2A1Q16706 1144 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 SESTD1Q86VW0 696 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 MYCP01106 439 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-213ENST00000448038 RHOXF2BP0C7M4 288 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 TM4SF1P30408 202 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 ABCD1P33897 745 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 PIK3CAP42336 1068 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 RNASE9P60153 205 aaKnown RBP8.12□□□□□ -1.11
SYNE1-213ENST00000448038 NEDD9Q14511 834 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 PNMA8AQ86V59 439 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-213ENST00000448038 FMR1NBQ8N0W7 255 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-213ENST00000448038 RNF34Q969K3 372 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 LRRC45Q96CN5 670 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 PPP1R16BQ96T49 567 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 RHOXF2Q9BQY4 288 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 CNTNAP5Q8WYK1 1306 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 FSD2A1L4K1 749 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 FAM205CA6NFA0 338 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 ATF7P17544 494 aaPredicted RBP8.12□□□□□ -1.11
SYNE1-213ENST00000448038 U2AF2P26368 475 aaKnown RBP eCLIP8.12□□□□□ -1.11
SYNE1-213ENST00000448038 TUBB4BP68371 445 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 NBPF9Q3BBW0 867 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 UNC13DQ70J99 1090 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 UBL4BQ8N7F7 174 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 RAD54LQ92698 747 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 JMJD4Q9H9V9 463 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 ST7Q9NRC1 585 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 FAM184BQ9ULE4 1060 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 HPS5Q9UPZ3 1129 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 USTQ9Y2C2 406 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 GDAQ9Y2T3 454 aa8.12□□□□□ -1.11
SYNE1-213ENST00000448038 AFPP02771 609 aaKnown RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 HOXA7P31268 230 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 TERF1P54274 439 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 TROAPQ12815 778 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 SNAPC2Q13487 334 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 TTLL4Q14679 1199 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 PPP1R7Q15435 360 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 CEP55Q53EZ4 464 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 CCDC114Q96M63 670 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 NAP1L3Q99457 506 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 CD2APQ9Y5K6 639 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 IKBKGQ9Y6K9 419 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 PEAK1Q9H792 1746 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 WTIPA6NIX2 430 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 K7ERI5 159 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 HSF2BPO75031 334 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 ABCB4P21439 1286 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 SFNP31947 248 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 ZRSR2Q15696 482 aaKnown RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 NLRP4Q96MN2 994 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 RPS6KC1Q96S38 1066 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 DESI2Q9BSY9 194 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 POTEFA5A3E0 1075 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 STXBP3O00186 592 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 CTDNEP1O95476 244 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 P4HBP07237 508 aaKnown RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 POTEIP0CG38 1075 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 CAP2P40123 477 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 QARSP47897 775 aaKnown RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 ALCAMQ13740 583 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 BAATQ14032 418 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 POTEGQ6S5H5 508 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 POTEEQ6S8J3 1075 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 PADI6Q6TGC4 694 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 ANKRD13AQ8IZ07 590 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 NEK9Q8TD19 979 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 KCNB2Q92953 911 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 MRC1P22897 1456 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 POLR3GO15318 223 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 FDPSP14324 419 aaKnown RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 BBXQ8WY36 941 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 FAM167AQ96KS9 214 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 NT5C1BQ96P26 610 aa8.11□□□□□ -1.11
SYNE1-213ENST00000448038 FAM193BQ96PV7 902 aaPredicted RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 ADARB2Q9NS39 739 aaKnown RBP8.11□□□□□ -1.11
SYNE1-213ENST00000448038 DDTLA6NHG4 134 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 ATP2A1O14983 1001 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 SMARCA1P28370 1054 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 CASP14P31944 242 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 PDE6CP51160 858 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 LRRC63Q05C16 580 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 SWSAP1Q6NVH7 229 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 SHC4Q6S5L8 630 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 LRRC8AQ8IWT6 810 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 SCYL3Q8IZE3 742 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 MCPH1Q8NEM0 835 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 ZKSCAN4Q969J2 545 aaPredicted RBP8.1□□□□□ -1.11
SYNE1-213ENST00000448038 THAP9Q9H5L6 903 aa8.1□□□□□ -1.11
SYNE1-213ENST00000448038 MYL3P08590 195 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms