RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 ASXL2Q76L83 1435 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 HGSO14964 777 aaPredicted RBP5.08□□□□□ -1.6
VPS41-207ENST00000439468 SDSP20132 328 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 HTRA3P83110 453 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 TCEA2Q15560 299 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 NT5DC1Q5TFE4 455 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 ERICH6BQ5W0A0 696 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 KCNT2Q6UVM3 1135 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 FAM126BQ8IXS8 530 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 Q8N1Y9 231 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 SLC7A14Q8TBB6 771 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 C20orf173Q96LM9 149 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 IPO9Q96P70 1041 aaKnown RBP5.08□□□□□ -1.6
VPS41-207ENST00000439468 SYT3Q9BQG1 590 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 NCOA5Q9HCD5 579 aaKnown RBP5.08□□□□□ -1.6
VPS41-207ENST00000439468 NTMQ9P121 344 aa5.08□□□□□ -1.6
VPS41-207ENST00000439468 B8ZZF3 427 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 CLSTN1O94985 981 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 SARSP49591 514 aaKnown RBP5.07□□□□□ -1.6
VPS41-207ENST00000439468 GJA9P57773 515 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 NKX3-2P78367 333 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 CAP1Q01518 475 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 PABPC4Q13310 644 aaKnown RBP eCLIP5.07□□□□□ -1.6
VPS41-207ENST00000439468 TESK1Q15569 626 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 FGD2Q7Z6J4 655 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 MIB1Q86YT6 1006 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 CARFQ8N187 725 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 GPATCH3Q96I76 525 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 FEZ1Q99689 392 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 GORASP1Q9BQQ3 440 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 JAM3Q9BX67 310 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 KRTAP4-11Q9BYQ6 195 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 SLC52A2Q9HAB3 445 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 PCDH18Q9HCL0 1135 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 GPR27Q9NS67 375 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 PPARGC1AQ9UBK2 798 aaKnown RBP5.07□□□□□ -1.6
VPS41-207ENST00000439468 NDOR1Q9UHB4 597 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 ZNF652Q9Y2D9 606 aa5.07□□□□□ -1.6
VPS41-207ENST00000439468 ADAMTS20P59510 1910 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 SH3D21A4FU49 640 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 KRIT1O00522 736 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 MAFKO60675 156 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 MSCO60682 206 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 SYN1P17600 705 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 GRK2P25098 689 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 GRK3P35626 688 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 SUMO1P63165 101 aaKnown RBP5.06□□□□□ -1.6
VPS41-207ENST00000439468 FILIP1Q7Z7B0 1213 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 ARRDC4Q8NCT1 418 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 DCAF4Q8WV16 495 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 KCNJ15Q99712 375 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 C11orf84Q9BUA3 381 aaPredicted RBP5.06□□□□□ -1.6
VPS41-207ENST00000439468 NGRNQ9NPE2 291 aaKnown RBP5.06□□□□□ -1.6
VPS41-207ENST00000439468 IFT57Q9NWB7 429 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 RTEL1Q9NZ71 1219 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 MYOTQ9UBF9 498 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 NPFFR2Q9Y5X5 522 aa5.06□□□□□ -1.6
VPS41-207ENST00000439468 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.05□□□□□ -1.6
VPS41-207ENST00000439468 PLD2O14939 933 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 FOXD2O60548 495 aaPredicted RBP5.05□□□□□ -1.6
VPS41-207ENST00000439468 GNAT1P11488 350 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 MASP1P48740 699 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 DLX2Q07687 328 aaPredicted RBP5.05□□□□□ -1.6
VPS41-207ENST00000439468 KIZQ2M2Z5 673 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 ZC3H12BQ5HYM0 836 aaKnown RBP5.05□□□□□ -1.6
VPS41-207ENST00000439468 RSPO2Q6UXX9 243 aaPredicted RBP5.05□□□□□ -1.6
VPS41-207ENST00000439468 TTLL6Q8N841 843 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 KYQ8NBH2 561 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 PIP4K2CQ8TBX8 421 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS41-207ENST00000439468 NINJ1Q92982 152 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 TOE1Q96GM8 510 aaKnown RBP5.05□□□□□ -1.6
VPS41-207ENST00000439468 SCLYQ96I15 445 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 ZSWIM3Q96MP5 696 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 FAM126AQ9BYI3 521 aaPredicted RBP5.05□□□□□ -1.6
VPS41-207ENST00000439468 SPATA6Q9NWH7 488 aaPredicted RBP5.05□□□□□ -1.6
VPS41-207ENST00000439468 DTLQ9NZJ0 730 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 PCDHA9Q9Y5H5 950 aa5.05□□□□□ -1.6
VPS41-207ENST00000439468 CCDC163A0A0D9SF12 145 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 TCRBV5S2A0A599 114 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 PRRG2O14669 202 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 SLC27A2O14975 620 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 RASGRP1O95267 797 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 CANXP27824 592 aaKnown RBP5.04□□□□□ -1.6
VPS41-207ENST00000439468 THBS2P35442 1172 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 ITGA1P56199 1179 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 EMC4Q5J8M3 183 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 UBXN11Q5T124 520 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 PRAMEF18Q5VWM3 479 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 CNNM4Q6P4Q7 775 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 LBX2Q6XYB7 198 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 BRAPQ7Z569 592 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 FRMD5Q7Z6J6 570 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 NIM1KQ8IY84 436 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 IFNL3Q8IZI9 196 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 UBR7Q8N806 425 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 DDX1Q92499 740 aaKnown RBP5.04□□□□□ -1.6
VPS41-207ENST00000439468 ALG1Q9BT22 464 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 SMOC1Q9H4F8 434 aa5.04□□□□□ -1.6
VPS41-207ENST00000439468 TRIM39Q9HCM9 518 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms