RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-205ENST00000433888 TMEM209Q96SK2 561 aa6.33□□□□□ -1.4
PTPN4-205ENST00000433888 TMEM168Q9H0V1 697 aa6.33□□□□□ -1.4
PTPN4-205ENST00000433888 L2HGDHQ9H9P8 463 aa6.33□□□□□ -1.4
PTPN4-205ENST00000433888 GPR27Q9NS67 375 aa6.33□□□□□ -1.4
PTPN4-205ENST00000433888 PPARGC1AQ9UBK2 798 aaKnown RBP6.33□□□□□ -1.4
PTPN4-205ENST00000433888 CROTQ9UKG9 612 aa6.33□□□□□ -1.4
PTPN4-205ENST00000433888 EPHB4P54760 987 aa6.32□□□□□ -1.4
PTPN4-205ENST00000433888 PPP2CBP62714 309 aa6.32□□□□□ -1.4
PTPN4-205ENST00000433888 PPP2CAP67775 309 aa6.32□□□□□ -1.4
PTPN4-205ENST00000433888 CHST13Q8NET6 341 aa6.32□□□□□ -1.4
PTPN4-205ENST00000433888 TTLL11Q8NHH1 800 aa6.32□□□□□ -1.4
PTPN4-205ENST00000433888 KCTD13Q8WZ19 329 aa6.32□□□□□ -1.4
PTPN4-205ENST00000433888 JAM3Q9BX67 310 aa6.32□□□□□ -1.4
PTPN4-205ENST00000433888 PDGFDQ9GZP0 370 aaPredicted RBP6.32□□□□□ -1.4
PTPN4-205ENST00000433888 CYP7B1O75881 506 aa6.31□□□□□ -1.4
PTPN4-205ENST00000433888 NFATC3Q12968 1075 aa6.31□□□□□ -1.4
PTPN4-205ENST00000433888 RSPO2Q6UXX9 243 aaPredicted RBP6.31□□□□□ -1.4
PTPN4-205ENST00000433888 TMC5Q6UXY8 1006 aa6.31□□□□□ -1.4
PTPN4-205ENST00000433888 PLEKHH3Q7Z736 793 aa6.31□□□□□ -1.4
PTPN4-205ENST00000433888 MCF2L2Q86YR7 1114 aa6.31□□□□□ -1.4
PTPN4-205ENST00000433888 KBTBD2Q8IY47 623 aa6.31□□□□□ -1.4
PTPN4-205ENST00000433888 KLHL36Q8N4N3 616 aa6.31□□□□□ -1.4
PTPN4-205ENST00000433888 PIP4K2CQ8TBX8 421 aa6.31□□□□□ -1.4
PTPN4-205ENST00000433888 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.31□□□□□ -1.4
PTPN4-205ENST00000433888 IER2Q9BTL4 223 aa6.31□□□□□ -1.4
PTPN4-205ENST00000433888 TSC22D4Q9Y3Q8 395 aa6.31□□□□□ -1.4
PTPN4-205ENST00000433888 SLC27A2O14975 620 aa6.3□□□□□ -1.4
PTPN4-205ENST00000433888 OTOP3Q7RTS5 596 aa6.3□□□□□ -1.4
PTPN4-205ENST00000433888 CELF2-AS1Q8N7Q2 184 aa6.3□□□□□ -1.4
PTPN4-205ENST00000433888 WRNIP1Q96S55 665 aa6.3□□□□□ -1.4
PTPN4-205ENST00000433888 PTPN18Q99952 460 aa6.3□□□□□ -1.4
PTPN4-205ENST00000433888 TINF2Q9BSI4 451 aa6.3□□□□□ -1.4
PTPN4-205ENST00000433888 NPEPPSL1A6NEC2 478 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 MAFKO60675 156 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 KLHL18O94889 574 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 HABP4Q5JVS0 413 aaKnown RBP6.29□□□□□ -1.4
PTPN4-205ENST00000433888 SPRED1Q7Z699 444 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 TRIM48Q8IWZ4 208 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 RBM12BQ8IXT5 1001 aaKnown RBP6.29□□□□□ -1.4
PTPN4-205ENST00000433888 DTX3Q8N9I9 347 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 NUDT10Q8NFP7 164 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 NUDT11Q96G61 164 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 WWC2-AS2Q96NR7 200 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 PHF20Q9BVI0 1012 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 ADAM29Q9UKF5 820 aa6.29□□□□□ -1.4
PTPN4-205ENST00000433888 PATE3B3GLJ2 98 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 KRIT1O00522 736 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 B4GALT4O60513 344 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 GRIN1Q05586 938 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 NTRK3Q16288 839 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 TRMT10BQ6PF06 316 aaKnown RBP6.28□□□□□ -1.4
PTPN4-205ENST00000433888 Q8N1X5 172 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 SLC16A11Q8NCK7 471 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 HNRNPLLQ8WVV9 542 aaKnown RBP6.28□□□□□ -1.4
PTPN4-205ENST00000433888 SGSM3Q96HU1 749 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 KLC2Q9H0B6 622 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 MEGF9Q9H1U4 602 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 ST7Q9NRC1 585 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 TELO2Q9Y4R8 837 aa6.28□□□□□ -1.4
PTPN4-205ENST00000433888 AGRPO00253 132 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 KLF4O43474 513 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 FAHP16930 419 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 ARID5AQ03989 594 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 GNL2Q13823 731 aaKnown RBP6.27□□□□□ -1.41
PTPN4-205ENST00000433888 HSP90AA2PQ14568 343 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-205ENST00000433888 R3HDM1Q15032 1099 aaKnown RBP6.27□□□□□ -1.41
PTPN4-205ENST00000433888 PHF19Q5T6S3 580 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 KCNT2Q6UVM3 1135 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 LBX2Q6XYB7 198 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 ARHGEF18Q6ZSZ5 1173 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 USP53Q70EK8 1073 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 UHMK1Q8TAS1 419 aaKnown RBP6.27□□□□□ -1.41
PTPN4-205ENST00000433888 SH3RF3Q8TEJ3 882 aaPredicted RBP6.27□□□□□ -1.41
PTPN4-205ENST00000433888 DLL4Q9NR61 685 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 FTSJ1Q9UET6 329 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 ZDHHC9Q9Y397 364 aa6.27□□□□□ -1.41
PTPN4-205ENST00000433888 NKRFO15226 690 aaKnown RBP eCLIP6.26□□□□□ -1.41
PTPN4-205ENST00000433888 KNG1P01042 644 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 LTFP02788 710 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 CHGBP05060 677 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 CKMP06732 381 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 FGFR1P11362 822 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 COL6A2P12110 1019 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 TUSC3Q13454 348 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 DDR2Q16832 855 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 PAN2Q504Q3 1202 aaKnown RBP6.26□□□□□ -1.41
PTPN4-205ENST00000433888 SLFN13Q68D06 897 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 CIR1Q86X95 450 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-205ENST00000433888 DCAF4Q8WV16 495 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 OSBP2Q969R2 916 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 GMLQ99445 158 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 BARX1Q9HBU1 254 aaPredicted RBP6.26□□□□□ -1.41
PTPN4-205ENST00000433888 ARHGEF4Q9NR80 690 aa6.26□□□□□ -1.41
PTPN4-205ENST00000433888 CNOT4O95628 575 aaKnown RBP6.25□□□□□ -1.41
PTPN4-205ENST00000433888 FSHBP01225 129 aa6.25□□□□□ -1.41
PTPN4-205ENST00000433888 TCF3P15923 654 aa6.25□□□□□ -1.41
PTPN4-205ENST00000433888 EPHA5P54756 1037 aa6.25□□□□□ -1.41
PTPN4-205ENST00000433888 SMAD2Q15796 467 aaKnown RBP6.25□□□□□ -1.41
PTPN4-205ENST00000433888 VASNQ6EMK4 673 aa6.25□□□□□ -1.41
PTPN4-205ENST00000433888 CRIP3Q6Q6R5 217 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms