RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ADGRF4Q8IZF3 695 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 LRRC47Q8N1G4 583 aaKnown RBP12.46□□□□□ -0.41
USP4-205ENST00000431357 HAS1Q92839 578 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 DRC1Q96MC2 740 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 TRERF1Q96PN7 1200 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 TLR10Q9BXR5 811 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 DAGLAQ9Y4D2 1042 aa12.46□□□□□ -0.41
USP4-205ENST00000431357 FOCADQ5VW36 1801 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 GRID2IPA4D2P6 1211 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 GOLGA6CA6NDK9 693 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 ZBTB5O15062 677 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 GOLGA6DP0CG33 693 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 EPB41P11171 864 aaKnown RBP12.46□□□□□ -0.42
USP4-205ENST00000431357 AKR1B1P15121 316 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 PPFIA1Q13136 1202 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 C8orf74Q6P047 294 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 DPP8Q6V1X1 898 aaPredicted RBP12.46□□□□□ -0.42
USP4-205ENST00000431357 TRIM59Q8IWR1 403 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 ZC3H3Q8IXZ2 948 aaKnown RBP12.46□□□□□ -0.42
USP4-205ENST00000431357 GSPT2Q8IYD1 628 aaKnown RBP12.46□□□□□ -0.42
USP4-205ENST00000431357 TBC1D16Q8TBP0 767 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 MTMR8Q96EF0 704 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 GOLGA6AQ9NYA3 693 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 DMGDHQ9UI17 866 aaKnown RBP12.46□□□□□ -0.42
USP4-205ENST00000431357 ATP6V0A2Q9Y487 856 aa12.46□□□□□ -0.42
USP4-205ENST00000431357 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.46□□□□□ -0.42
USP4-205ENST00000431357 SLC1A4P43007 532 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 NAP1L1P55209 391 aaKnown RBP12.45□□□□□ -0.42
USP4-205ENST00000431357 NAB2Q15742 525 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 ECM1Q16610 540 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 UBE2SQ16763 222 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 C10orf76Q5T2E6 689 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 HAUS3Q68CZ6 603 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 TMC4Q7Z404 712 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 SLC51AQ86UW1 340 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 IFT20Q8IY31 132 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 SH3GL2Q99962 352 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 LSM14BQ9BX40 385 aaKnown RBP12.45□□□□□ -0.42
USP4-205ENST00000431357 PSTPIP2Q9H939 334 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 AIPL1Q9NZN9 384 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 KCNG1Q9UIX4 513 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 PITPNM2Q9BZ72 1349 aa12.45□□□□□ -0.42
USP4-205ENST00000431357 HSF2BPO75031 334 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 NOL4O94818 638 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 PLA2G4BP0C869 781 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 USP11P51784 963 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 APBA1Q02410 837 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 SLC18A3Q16572 532 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 EDRF1Q3B7T1 1238 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 MCTP2Q6DN12 878 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 MOXD1Q6UVY6 613 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 GDAP1L1Q96MZ0 367 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 RUFY1Q96T51 708 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 FAM107BQ9H098 131 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 NLRC4Q9NPP4 1024 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 SERPINB13Q9UIV8 391 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 ATF5Q9Y2D1 282 aaPredicted RBP12.44□□□□□ -0.42
USP4-205ENST00000431357 PCDHA2Q9Y5H9 948 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 STK24Q9Y6E0 443 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 TAF1LQ8IZX4 1826 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 BTNL10A8MVZ5 291 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 HOXA10P31260 410 aaPredicted RBP12.44□□□□□ -0.42
USP4-205ENST00000431357 MATR3P43243 847 aaKnown RBP eCLIP12.44□□□□□ -0.42
USP4-205ENST00000431357 POLR2FP61218 127 aaKnown RBP12.44□□□□□ -0.42
USP4-205ENST00000431357 EZH2Q15910 746 aaKnown RBP12.44□□□□□ -0.42
USP4-205ENST00000431357 FAM196AQ6ZSG2 479 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 GLIS3Q8NEA6 775 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 HDAC7Q8WUI4 952 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 RIN2Q8WYP3 895 aaPredicted RBP12.44□□□□□ -0.42
USP4-205ENST00000431357 CRAMP1Q96RY5 1269 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 NCAPGQ9BPX3 1015 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 POLLQ9UGP5 575 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 SALL4Q9UJQ4 1053 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 LY75O60449 1722 aa12.44□□□□□ -0.42
USP4-205ENST00000431357 CYP3A7-CYP3A51PA0A087WV96 503 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 FRMD3A2A2Y4 597 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 CES2O00748 559 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 CETN3O15182 167 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 NCK2O43639 380 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 BUB1O43683 1085 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 TLR2O60603 784 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 PPP1R11O60927 126 aaPredicted RBP12.43□□□□□ -0.42
USP4-205ENST00000431357 SSBP05455 408 aaKnown RBP eCLIP12.43□□□□□ -0.42
USP4-205ENST00000431357 CYP3A7P24462 503 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 ATP2B2Q01814 1243 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 PICALMQ13492 652 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 ASIC2Q16515 512 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 HERC4Q5GLZ8 1057 aaPredicted RBP12.43□□□□□ -0.42
USP4-205ENST00000431357 SLFN12Q8IYM2 578 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 ANKRD13CQ8N6S4 541 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 ZBTB9Q96C00 473 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 NGLY1Q96IV0 654 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 CCDC17Q96LX7 622 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 MBOAT7Q96N66 472 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 COA1Q9GZY4 146 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 KCTD10Q9H3F6 313 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 GDF3Q9NR23 364 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 EMILIN3Q9NT22 766 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 RSPH14Q9UHP6 348 aa12.43□□□□□ -0.42
USP4-205ENST00000431357 LCMT1Q9UIC8 334 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms