RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 PDE6AP16499 860 aa8.27□□□□□ -1.09
CCDC88A-206ENST00000430086 SDSP20132 328 aa8.27□□□□□ -1.09
CCDC88A-206ENST00000430086 EPHA5P54756 1037 aa8.27□□□□□ -1.09
CCDC88A-206ENST00000430086 ZNF124Q15973 351 aa8.27□□□□□ -1.09
CCDC88A-206ENST00000430086 ABHD17CQ6PCB6 329 aa8.27□□□□□ -1.09
CCDC88A-206ENST00000430086 TMEFF1Q8IYR6 380 aa8.27□□□□□ -1.09
CCDC88A-206ENST00000430086 SH3RF2Q8TEC5 729 aa8.27□□□□□ -1.09
CCDC88A-206ENST00000430086 NGRNQ9NPE2 291 aaKnown RBP8.27□□□□□ -1.09
CCDC88A-206ENST00000430086 HSPBP1Q9NZL4 362 aa8.27□□□□□ -1.09
CCDC88A-206ENST00000430086 ZNF561-AS1K7EIQ3 104 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 AMY2AP04746 511 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 AMY2BP19961 511 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 MC3RP41968 323 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 DNM2P50570 870 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 KCNA10Q16322 511 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 DALRD3Q5D0E6 543 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 ARHGAP36Q6ZRI8 547 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 OSTM1Q86WC4 334 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 ANKLE2Q86XL3 938 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 PCDH18Q9HCL0 1135 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 DTLQ9NZJ0 730 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 COQ6Q9Y2Z9 468 aa8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 TNPO3Q9Y5L0 923 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-206ENST00000430086 OPA1O60313 960 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 LINC00310P59036 64 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 FOXO4P98177 505 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 TUSC3Q13454 348 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 SSPNQ14714 243 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 ZCCHC8Q6NZY4 707 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 KCTD1Q719H9 257 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 OVCH1Q7RTY7 1134 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 DDX53Q86TM3 631 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 ZC3H18Q86VM9 953 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 CILP2Q8IUL8 1156 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 NIM1KQ8IY84 436 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 NLGN4XQ8N0W4 816 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 CLEC4DQ8WXI8 215 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 TOE1Q96GM8 510 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 EPB41L4AQ9HCS5 686 aaPredicted RBP8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 CNOT6Q9ULM6 557 aaKnown RBP8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 SRPK3Q9UPE1 567 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 FAN1Q9Y2M0 1017 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 TELO2Q9Y4R8 837 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 KCTD3Q9Y597 815 aa8.25□□□□□ -1.09
CCDC88A-206ENST00000430086 NPIPB6E9PJ23 425 aa8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 C8BP07358 591 aa8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 JAM2P57087 298 aa8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 C21orf62-AS1Q17RA5 79 aa8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 CR1LQ2VPA4 569 aa8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 PNPLA5Q7Z6Z6 429 aaPredicted RBP8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 FAM129CQ86XR2 697 aa8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 IGSF22Q8N9C0 903 aa8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 SMARCC2Q8TAQ2 1214 aa8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 YIPF4Q9BSR8 244 aa8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 SMURF1Q9HCE7 757 aa8.24□□□□□ -1.09
CCDC88A-206ENST00000430086 RFXAPO00287 272 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 MAN2B1O00754 1011 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 LRG1P02750 347 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 CYP2C8P10632 490 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 PI3P19957 117 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 FLT3P36888 993 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 CAP1Q01518 475 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 ZNF460Q14592 562 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 TMEM177Q53S58 311 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 ZNF385BQ569K4 471 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 FIGNQ5HY92 759 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 HHIPL2Q6UWX4 724 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 RBM12BQ8IXT5 1001 aaKnown RBP8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 SAMD15Q9P1V8 674 aa8.23□□□□□ -1.09
CCDC88A-206ENST00000430086 DBX1A6NMT0 343 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 LTFP02788 710 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 POU3F2P20265 443 aaPredicted RBP8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 STAT5AP42229 794 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 LIMS1P48059 325 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 NKX3-2P78367 333 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 TAF7LQ5H9L4 462 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 CNKSR3Q6P9H4 555 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 TEPPQ6URK8 271 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 CD300LDQ6UXZ3 194 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 PTRH1Q86Y79 214 aaKnown RBP8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 FAM26EQ8N5C1 309 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 CISD2Q8N5K1 135 aaKnown RBP8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 MFSD3Q96ES6 412 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 DDX11Q96FC9 970 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 CD244Q9BZW8 370 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 GOLGA2P5Q9HBQ8 144 aa8.22□□□□□ -1.09
CCDC88A-206ENST00000430086 CLASP2O75122 1294 aaKnown RBP8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 FAHP16930 419 aa8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 KRT15P19012 456 aa8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 GJA4P35212 333 aa8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 MECP2P51608 486 aaKnown RBP8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 GYS2P54840 703 aa8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 HTRA3P83110 453 aa8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 PAN2Q504Q3 1202 aaKnown RBP8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 TM4SF20Q53R12 229 aa8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 UBE2R2Q712K3 238 aaPredicted RBP8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 LRRTM3Q86VH5 581 aa8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 DHX37Q8IY37 1157 aaKnown RBP8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 LINC00482Q8N8I6 264 aa8.21□□□□□ -1.1
CCDC88A-206ENST00000430086 ORAI3Q9BRQ5 295 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms