RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 LARP4BQ92615 738 aaKnown RBP11.85□□□□□ -0.51
CUX1-205ENST00000425244 JAKMIP2Q96AA8 810 aa11.85□□□□□ -0.51
CUX1-205ENST00000425244 CAPZA3Q96KX2 299 aa11.85□□□□□ -0.51
CUX1-205ENST00000425244 PNMA5Q96PV4 448 aa11.85□□□□□ -0.51
CUX1-205ENST00000425244 FUT8Q9BYC5 575 aa11.85□□□□□ -0.51
CUX1-205ENST00000425244 HAUS4Q9H6D7 363 aa11.85□□□□□ -0.51
CUX1-205ENST00000425244 FAM207AQ9NSI2 230 aaPredicted RBP11.85□□□□□ -0.51
CUX1-205ENST00000425244 BLOC1S4Q9NUP1 217 aa11.85□□□□□ -0.51
CUX1-205ENST00000425244 ESYT2A0FGR8 921 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 MACROD2A1Z1Q3 448 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 RASSF10A6NK89 507 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 SRGAP2O75044 1071 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 CYLC1P35663 651 aaPredicted RBP11.84□□□□□ -0.51
CUX1-205ENST00000425244 ZNF543Q08ER8 600 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 DGKZQ13574 1117 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 TUBB2AQ13885 445 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 KRT79Q5XKE5 535 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 ADGRF4Q8IZF3 695 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 ZKSCAN4Q969J2 545 aaPredicted RBP11.84□□□□□ -0.51
CUX1-205ENST00000425244 MTMR9Q96QG7 549 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 TUBB2BQ9BVA1 445 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 RAB34Q9BZG1 259 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 NHEJ1Q9H9Q4 299 aaPredicted RBP11.84□□□□□ -0.51
CUX1-205ENST00000425244 DICER1Q9UPY3 1922 aaKnown RBP11.84□□□□□ -0.51
CUX1-205ENST00000425244 ATP8B1O43520 1251 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 ATP1A1P05023 1023 aaKnown RBP11.84□□□□□ -0.51
CUX1-205ENST00000425244 SMARCA1P28370 1054 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 INPP5BP32019 993 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 CAP2P40123 477 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 NOVP48745 357 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 KRT83P78385 493 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 IRX5P78411 483 aaPredicted RBP11.84□□□□□ -0.51
CUX1-205ENST00000425244 ZBED6P86452 979 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 EAPPQ56P03 285 aaPredicted RBP11.84□□□□□ -0.51
CUX1-205ENST00000425244 MIIPQ5JXC2 388 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 NUP58Q9BVL2 599 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 LACRTQ9GZZ8 138 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 JMJD4Q9H9V9 463 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 SUGCTQ9HAC7 445 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 NYAP2Q9P242 653 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 USP17L10C9JJH3 530 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 NDUFB10O96000 172 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 KCNK18Q7Z418 384 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 MMRN2Q9H8L6 949 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 PGAP2Q9UHJ9 254 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 DUSP10Q9Y6W6 482 aa11.84□□□□□ -0.51
CUX1-205ENST00000425244 RCCD1A6NED2 376 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 POTEB2H3BUK9 544 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 PPP1R11O60927 126 aaPredicted RBP11.83□□□□□ -0.52
CUX1-205ENST00000425244 PLEKP08567 350 aaPredicted RBP11.83□□□□□ -0.52
CUX1-205ENST00000425244 GYS2P54840 703 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 VSNL1P62760 191 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 AMPD2Q01433 879 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 SEMA3FQ13275 785 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 UNC13DQ70J99 1090 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 GLIS3Q8NEA6 775 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 WRNIP1Q96S55 665 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 TTYH3Q9C0H2 523 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 ARHGEF10LQ9HCE6 1279 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 ABCB6Q9NP58 842 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 STK17AQ9UEE5 414 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 DDX25Q9UHL0 483 aaKnown RBP11.83□□□□□ -0.52
CUX1-205ENST00000425244 PNMA6FA0A0J9YX94 578 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 hCG_1984214I3L0E3 225 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 KRT86O43790 486 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 ERLIN1O75477 346 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 FXR2P51116 673 aaKnown RBP eCLIP11.83□□□□□ -0.52
CUX1-205ENST00000425244 MEA1Q16626 185 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 KIAA1755Q5JYT7 1200 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 KRT26Q7Z3Y9 468 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 ZNF713Q8N859 430 aaPredicted RBP11.83□□□□□ -0.52
CUX1-205ENST00000425244 CAGE1Q8TC20 777 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 RAD54LQ92698 747 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 DDX12PQ92771 950 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 CCDC42Q96M95 316 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 ZNF341Q9BYN7 854 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 TANGO6Q9C0B7 1094 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 ADARB2Q9NS39 739 aaKnown RBP11.83□□□□□ -0.52
CUX1-205ENST00000425244 TBC1D7Q9P0N9 293 aa11.83□□□□□ -0.52
CUX1-205ENST00000425244 ADM5C9JUS6 153 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 EPHB6O15197 1021 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 EDIL3O43854 480 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 ASNSP08243 561 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 SNHG28P0DPA3 235 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 TAL1P17542 331 aaPredicted RBP11.82□□□□□ -0.52
CUX1-205ENST00000425244 PPP1R2P41236 205 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 CENPPQ6IPU0 288 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.82□□□□□ -0.526e-12■■■■■ 49.8
CUX1-205ENST00000425244 APOBEC3FQ8IUX4 373 aaKnown RBP11.82□□□□□ -0.52
CUX1-205ENST00000425244 RETREG2Q8NC44 543 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 CUL5Q93034 780 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 COL2A1P02458 1487 aaPredicted RBP11.82□□□□□ -0.52
CUX1-205ENST00000425244 PHF20L1A8MW92 1017 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 ORC2Q13416 577 aaPredicted RBP11.82□□□□□ -0.52
CUX1-205ENST00000425244 SPA17Q15506 151 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 ECM1Q16610 540 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 VWA3BQ502W6 1294 aa11.82□□□□□ -0.52
CUX1-205ENST00000425244 BEND6Q5SZJ8 279 aaPredicted RBP11.82□□□□□ -0.52
CUX1-205ENST00000425244 GPATCH4Q5T3I0 446 aaKnown RBP11.82□□□□□ -0.52
CUX1-205ENST00000425244 MSANTD4Q8NCY6 345 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms