RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 FOPNLQ96NB1 174 aa7.4□□□□□ -1.23
SCN1A-204ENST00000423058 ABCF3Q9NUQ8 709 aa7.4□□□□□ -1.23
SCN1A-204ENST00000423058 ZHX1Q9UKY1 873 aaPredicted RBP7.4□□□□□ -1.23
SCN1A-204ENST00000423058 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.4□□□□□ -1.23
SCN1A-204ENST00000423058 BBOX1O75936 387 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 BCAMP50895 628 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 FAM160B2Q86V87 743 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 ALKBH8Q96BT7 664 aaKnown RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 USP17L12C9JPN9 530 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 USP17L21D6R901 530 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 MYO1DO94832 1006 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 LDHAP00338 332 aaKnown RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 IGHDP01880 384 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 KCNA6P17658 529 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 APBA1Q02410 837 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 ZNF274Q96GC6 653 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 CEP170P1Q96L14 293 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 KIF2CQ99661 725 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 SYTL2Q9HCH5 934 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 TOPORSQ9NS56 1045 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 TXLNGQ9NUQ3 528 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 FGFR1OP2Q9NVK5 253 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 RPN1P04843 607 aaKnown RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 PSMA3P25788 255 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 OCRLQ01968 901 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 VEPH1Q14D04 833 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 HEXIM2Q96MH2 286 aaKnown RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 ASPSCR1Q9BZE9 553 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 BLZF1Q9H2G9 400 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 KANSL2Q9H9L4 492 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 KIF17Q9P2E2 1029 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 PTPN22Q9Y2R2 807 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 ARL4DP49703 201 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 VPS41P49754 854 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 MTX1Q13505 466 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 CAPRIN1Q14444 709 aaKnown RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 KIF19Q2TAC6 998 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 SLF1Q9BQI6 1058 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 GPBP1L1Q9HC44 474 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 GTPBP10A4D1E9 387 aaKnown RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 E7EWF7 191 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 MAP3K10Q02779 954 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 RAD51Q06609 339 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 MXD4Q14582 209 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 CDC37Q16543 378 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 KRT40Q6A162 431 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 SPOPLQ6IQ16 392 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 PDXDC2PQ6P474 469 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 NOSTRINQ8IVI9 506 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 STAG1Q8WVM7 1258 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 ACAP3Q96P50 834 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 NDEL1Q9GZM8 345 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 DOLKQ9UPQ8 538 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 KIAA1024Q9UPX6 916 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 USP17L3A6NCW0 530 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 USP17L4A6NCW7 530 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 POC1B-GALNT4F8VUJ3 575 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 ALDH1A1P00352 501 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 GUCY2FP51841 1108 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 MAP3K7CLP57077 242 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 GABPB1Q06547 395 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 BRD3Q15059 726 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 SLC10A5Q5PT55 438 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 USP17L1Q7RTZ2 530 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 CFAP36Q96G28 342 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 FAM167AQ96KS9 214 aa7.39□□□□□ -1.23
SCN1A-204ENST00000423058 PACSIN2Q9UNF0 486 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-204ENST00000423058 E5RI56 91 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 KRT8P05787 483 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 ZAP70P43403 619 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 HSPA2P54652 639 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 TMCO5AQ8N6Q1 288 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 PI4KBQ9UBF8 816 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 TBX22Q9Y458 520 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 PEG3Q9GZU2 1588 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 BNIP3LO60238 219 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 MYL1P05976 194 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 COPB2P35606 906 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 ZC3H12BQ5HYM0 836 aaKnown RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 CC2D1AQ6P1N0 951 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 SUDS3Q9H7L9 328 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 KCNJ14Q9UNX9 436 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 TRIM33Q9UPN9 1127 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 SERPINB2P05120 415 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 H2AFZP0C0S5 128 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 PYGBP11216 843 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 EEF1DP29692 281 aaKnown RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 KCNJ6P48051 423 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 POLR2FP61218 127 aaKnown RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 MECOMQ03112 1051 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 H2AFVQ71UI9 128 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 SPATA17Q96L03 361 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 ZC4H2Q9NQZ6 224 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 WDR62O43379 1518 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 SHROOM2Q13796 1616 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 GTPBP6O43824 516 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 SMARCA1P28370 1054 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 GNL1P36915 607 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-204ENST00000423058 NT5C2P49902 561 aa7.38□□□□□ -1.23
SCN1A-204ENST00000423058 CCDC15Q0P6D6 951 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms