RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 USP26Q9BXU7 913 aa13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 TUT1Q9H6E5 874 aaKnown RBP13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 ZNF215Q9UL58 517 aaPredicted RBP13.3□□□□□ -0.28
SQSTM1-203ENST00000422245 CHD7Q9P2D1 2997 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 GTPBP6O43824 516 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 TLL1O43897 1013 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 SMIM10L2AP0DMW4 78 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 SMIM10L2BP0DMW5 78 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 RXRAP19793 462 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 ZNF200P98182 395 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 TAP1Q03518 808 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 ZNF618Q5T7W0 954 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 CYFIP1Q7L576 1253 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 MICU3Q86XE3 530 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 GIMAP8Q8ND71 665 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 GPRASP2Q96D09 838 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 CDHR1Q96JP9 859 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 GPR20Q99678 358 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 TSPYL2Q9H2G4 693 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 PSTPIP2Q9H939 334 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 PRDM6Q9NQX0 595 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 RTEL1Q9NZ71 1219 aa13.29□□□□□ -0.28
SQSTM1-203ENST00000422245 VCANP13611 3396 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 DOCK5Q9H7D0 1870 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 LGR5O75473 907 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 GNAT1P11488 350 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 POU3F3P20264 500 aaPredicted RBP13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 THPOP40225 353 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 DEFB103AP81534 67 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 COL9A3Q14050 684 aaPredicted RBP13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 IKBKEQ14164 716 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 HIC1Q14526 733 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 MBTPS1Q14703 1052 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 CCDC85BQ15834 202 aaPredicted RBP13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 SYNE3Q6ZMZ3 975 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 TEX2Q8IWB9 1127 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 FANCBQ8NB91 859 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 ATP6V0A1Q93050 837 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 ZBED2Q9BTP6 218 aa13.28□□□□□ -0.28
SQSTM1-203ENST00000422245 TRANK1O15050 2925 aa13.27□□□□□ -0.28
SQSTM1-203ENST00000422245 SPTBN5Q9NRC6 3674 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 SPDYE3A6NKU9 549 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 RSPH10B2B2RC85 870 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 ARHGEF15O94989 841 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 GJB5O95377 273 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 RSPH10BP0C881 870 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 MRPS5P82675 430 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 PPP1R18Q6NYC8 613 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 APOA5Q6Q788 366 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 HEATR3Q7Z4Q2 680 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 TRIM50Q86XT4 487 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 RAB11FIP4Q86YS3 637 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 CMTR1Q8N1G2 835 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 MICALL1Q8N3F8 863 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 ARNTL2Q8WYA1 636 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 ASB2Q96Q27 587 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 LRRC2Q9BYS8 371 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 BCAS3Q9H6U6 928 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 EHMT1Q9H9B1 1298 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 RBM28Q9NW13 759 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 PRRC2BQ5JSZ5 2229 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 NCOR1O75376 2440 aa13.27□□□□□ -0.29
SQSTM1-203ENST00000422245 EPOPA6NHQ4 379 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 CDC45O75419 566 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 COL4A4P53420 1690 aaPredicted RBP13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 SP4Q02446 784 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 KRT32Q14532 448 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 TCTN1Q2MV58 587 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 MICAL3Q7RTP6 2002 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 IL27Q8NEV9 243 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 CNTNAP5Q8WYK1 1306 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 NEK1Q96PY6 1258 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 RAD9AQ99638 391 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 RNPEPQ9H4A4 650 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 CERS4Q9HA82 394 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 MTCH2Q9Y6C9 303 aa13.26□□□□□ -0.29
SQSTM1-203ENST00000422245 NRCAMQ92823 1304 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 hCG_1642624A0A1W2PR95 340 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 LCHNA4D1U4 455 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 hCG_1984214I3L0E3 225 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 TREHO43280 583 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 AMHP03971 560 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 CTSHP09668 335 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 KCNA2P16389 499 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 ITGB5P18084 799 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 RCAN1P53805 252 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 MKRN4PQ13434 485 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 MTMR1Q13613 665 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 UBE2SQ16763 222 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 RTN1Q16799 776 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 AAK1Q2M2I8 961 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 TSGA10IPQ3SY00 556 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 PLEKHG4Q58EX7 1191 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 UTP14CQ5TAP6 766 aaKnown RBP13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 TMCO2Q7Z6W1 182 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 CCDC82Q8N4S0 544 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 ZNF713Q8N859 430 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 LMBR1Q8WVP7 490 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 SEPT8Q92599 483 aa13.25□□□□□ -0.29
SQSTM1-203ENST00000422245 SETD4Q9NVD3 440 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms