RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 FAM84AQ96KN4 292 aa3.76□□□□□ -1.81
VPS41-206ENST00000418457 YIPF4Q9BSR8 244 aa3.76□□□□□ -1.81
VPS41-206ENST00000418457 TARS2Q9BW92 718 aaKnown RBP3.76□□□□□ -1.81
VPS41-206ENST00000418457 TMX1Q9H3N1 280 aa3.76□□□□□ -1.81
VPS41-206ENST00000418457 CABP5Q9NP86 173 aa3.76□□□□□ -1.81
VPS41-206ENST00000418457 ASH2LQ9UBL3 628 aa3.76□□□□□ -1.81
VPS41-206ENST00000418457 MBD1Q9UIS9 605 aaPredicted RBP3.76□□□□□ -1.81
VPS41-206ENST00000418457 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.76□□□□□ -1.81
VPS41-206ENST00000418457 PRKAB1Q9Y478 270 aa3.76□□□□□ -1.81
VPS41-206ENST00000418457 SBNO2Q9Y2G9 1366 aa3.76□□□□□ -1.81
VPS41-206ENST00000418457 IRS2Q9Y4H2 1338 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 A0A087X0B3 334 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 ZNF561-AS1K7EIQ3 104 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 PDE8AO60658 829 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 AMY2AP04746 511 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 ASGR2P07307 311 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 TMEM253P0C7T8 217 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 NCAM1P13591 858 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 PFKLP17858 780 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 AMY2BP19961 511 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 POU3F2P20265 443 aaPredicted RBP3.75□□□□□ -1.81
VPS41-206ENST00000418457 PMLP29590 882 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 MASP1P48740 699 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 DLG4P78352 724 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 MESP2Q0VG99 397 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 TUSC3Q13454 348 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 FIGNQ5HY92 759 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 RNF187Q5TA31 235 aaPredicted RBP3.75□□□□□ -1.81
VPS41-206ENST00000418457 ETV3LQ6ZN32 361 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 SYDE1Q6ZW31 735 aaPredicted RBP3.75□□□□□ -1.81
VPS41-206ENST00000418457 KCTD1Q719H9 257 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 PNPLA5Q7Z6Z6 429 aaPredicted RBP3.75□□□□□ -1.81
VPS41-206ENST00000418457 ANKLE2Q86XL3 938 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 PTRH1Q86Y79 214 aaKnown RBP3.75□□□□□ -1.81
VPS41-206ENST00000418457 MIB1Q86YT6 1006 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 FAM126BQ8IXS8 530 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 FAM177A1Q8N128 213 aaPredicted RBP3.75□□□□□ -1.81
VPS41-206ENST00000418457 CHST14Q8NCH0 376 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 ARRDC4Q8NCT1 418 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 SH3RF2Q8TEC5 729 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 DDX11Q96FC9 970 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 SLC38A3Q99624 504 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 SGPP1Q9BX95 441 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 CD244Q9BZW8 370 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 RNF38Q9H0F5 515 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 DTLQ9NZJ0 730 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 PLA2G2DQ9UNK4 145 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 SRPK3Q9UPE1 567 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 ATP23Q9Y6H3 246 aa3.75□□□□□ -1.81
VPS41-206ENST00000418457 SLC12A8A0AV02 714 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 FAM83GA6ND36 823 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 GSG1L2A8MUP6 293 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 CBX4O00257 560 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 ETV2O00321 342 aaPredicted RBP3.74□□□□□ -1.81
VPS41-206ENST00000418457 NFIBO00712 420 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 MAN2B1O00754 1011 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 KCNK3O14649 394 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 N4BP3O15049 544 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 BUB1BO60566 1050 aaPredicted RBP3.74□□□□□ -1.81
VPS41-206ENST00000418457 LTFP02788 710 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 FBLN1P23142 703 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 EPHA5P54756 1037 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 NCKAP1LP55160 1127 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 GRIN1Q05586 938 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 CACNB2Q08289 660 aaPredicted RBP3.74□□□□□ -1.81
VPS41-206ENST00000418457 PCBP1Q15365 356 aaKnown RBP eCLIP3.74□□□□□ -1.81
VPS41-206ENST00000418457 ARHGAP44Q17R89 818 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 OGFOD2Q6N063 350 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 HHIPL2Q6UWX4 724 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 ZNF662Q6ZS27 426 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 ZC3H18Q86VM9 953 aaKnown RBP3.74□□□□□ -1.81
VPS41-206ENST00000418457 THNSL2Q86YJ6 484 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 RBM12BQ8IXT5 1001 aaKnown RBP3.74□□□□□ -1.81
VPS41-206ENST00000418457 TTLL11Q8NHH1 800 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 MZB1Q8WU39 189 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 CLEC4DQ8WXI8 215 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 CPA5Q8WXQ8 436 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 TOE1Q96GM8 510 aaKnown RBP3.74□□□□□ -1.81
VPS41-206ENST00000418457 FMNL2Q96PY5 1086 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 PPP1R16BQ96T49 567 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 ORAI3Q9BRQ5 295 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 BOCQ9BWV1 1114 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 MTFR1LQ9H019 292 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 SMURF1Q9HCE7 757 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 GCM1Q9NP62 436 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 NGRNQ9NPE2 291 aaKnown RBP3.74□□□□□ -1.81
VPS41-206ENST00000418457 MAPRE3Q9UPY8 281 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 FAN1Q9Y2M0 1017 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 TELO2Q9Y4R8 837 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 PCDHA5Q9Y5H7 936 aa3.74□□□□□ -1.81
VPS41-206ENST00000418457 PTPDC1A2A3K4 754 aa3.73□□□□□ -1.81
VPS41-206ENST00000418457 TCAF2A6NFQ2 919 aa3.73□□□□□ -1.81
VPS41-206ENST00000418457 TRAF5O00463 557 aa3.73□□□□□ -1.81
VPS41-206ENST00000418457 GAS7O60861 476 aa3.73□□□□□ -1.81
VPS41-206ENST00000418457 DNAJC6O75061 913 aa3.73□□□□□ -1.81
VPS41-206ENST00000418457 CLASP2O75122 1294 aaKnown RBP3.73□□□□□ -1.81
VPS41-206ENST00000418457 HIP1RO75146 1068 aa3.73□□□□□ -1.81
VPS41-206ENST00000418457 KRT37O76014 449 aa3.73□□□□□ -1.81
VPS41-206ENST00000418457 PTPN1P18031 435 aaKnown RBP3.73□□□□□ -1.81
VPS41-206ENST00000418457 GLDCP23378 1020 aa3.73□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms