RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 PANK1Q8TE04 598 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 SEC14L1Q92503 715 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 KCNN1Q92952 543 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 WNK4Q96J92 1243 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 FAM84AQ96KN4 292 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 KCNJ15Q99712 375 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 SAMD15Q9P1V8 674 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 KLHL14Q9P2G3 628 aa6.37□□□□□ -1.39
VPS54-204ENST00000416400 SEMA7AO75326 666 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 VIPR1P32241 457 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 TXKP42681 527 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 PRR5P85299 388 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 EXOSC10Q01780 885 aaKnown RBP6.36□□□□□ -1.39
VPS54-204ENST00000416400 PKN1Q16512 942 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 PLEKHN1Q494U1 663 aaPredicted RBP6.36□□□□□ -1.39
VPS54-204ENST00000416400 FAM47CQ5HY64 1035 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 NLRP10Q86W26 655 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 Q8N1Y9 231 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 OR2W6PQ8NHA6 318 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 ALG3Q92685 438 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 USP7Q93009 1102 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 PPP1R16BQ96T49 567 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 JAM3Q9BX67 310 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 MTFR1LQ9H019 292 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS54-204ENST00000416400 RXFP1Q9HBX9 757 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 FBXL7Q9UJT9 491 aa6.36□□□□□ -1.39
VPS54-204ENST00000416400 HGSO14964 777 aaPredicted RBP6.35□□□□□ -1.39
VPS54-204ENST00000416400 GLRX3O76003 335 aaKnown RBP6.35□□□□□ -1.39
VPS54-204ENST00000416400 EYA4O95677 639 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 SRGAP2CP0DJJ0 459 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 SLC6A11P48066 632 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 BRDTQ58F21 947 aaPredicted RBP6.35□□□□□ -1.39
VPS54-204ENST00000416400 ODR4Q5SWX8 454 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 STEAP3Q658P3 488 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 SYDE1Q6ZW31 735 aaPredicted RBP6.35□□□□□ -1.39
VPS54-204ENST00000416400 MILR1Q7Z6M3 343 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 IGSF22Q8N9C0 903 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 WDR66Q8TBY9 1149 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 FBXW5Q969U6 566 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 TTC1Q99614 292 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 YIPF4Q9BSR8 244 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 IPPKQ9H8X2 491 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 CATSPERZQ9NTU4 200 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 FBLN5Q9UBX5 448 aa6.35□□□□□ -1.39
VPS54-204ENST00000416400 TEX51A0A1B0GUA7 166 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 NFIBO00712 420 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 BRINP1O60477 761 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 KCNA6P17658 529 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 PFKLP17858 780 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 SCNN1BP51168 640 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 GUCY2FP51841 1108 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 SART3Q15020 963 aaKnown RBP6.34□□□□□ -1.39
VPS54-204ENST00000416400 TARBP2Q15633 366 aaKnown RBP6.34□□□□□ -1.39
VPS54-204ENST00000416400 ABHD17CQ6PCB6 329 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 DDX11Q96FC9 970 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 ORAI3Q9BRQ5 295 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 CELF4Q9BZC1 486 aaKnown RBP6.34□□□□□ -1.39
VPS54-204ENST00000416400 MCOLN1Q9GZU1 580 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 CABP5Q9NP86 173 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 PPARGC1AQ9UBK2 798 aaKnown RBP6.34□□□□□ -1.39
VPS54-204ENST00000416400 COQ6Q9Y2Z9 468 aa6.34□□□□□ -1.39
VPS54-204ENST00000416400 M0R2C6 588 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 CBX4O00257 560 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 DNM2P50570 870 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 ZNF200P98182 395 aaPredicted RBP6.33□□□□□ -1.4
VPS54-204ENST00000416400 CRY1Q16526 586 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 RNF219Q5W0B1 726 aaPredicted RBP6.33□□□□□ -1.4
VPS54-204ENST00000416400 OGFOD2Q6N063 350 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 NECAB2Q7Z6G3 386 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 KIF18BQ86Y91 864 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 TRIM48Q8IWZ4 208 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 PCDH19Q8TAB3 1148 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS54-204ENST00000416400 JDP2Q8WYK2 163 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 TSPAN17Q96FV3 270 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 IFT22Q9H7X7 185 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 KCNK12Q9HB15 430 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 PALD1Q9ULE6 856 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 G3BP2Q9UN86 482 aaKnown RBP6.33□□□□□ -1.4
VPS54-204ENST00000416400 APOBEC2Q9Y235 224 aaKnown RBP6.33□□□□□ -1.4
VPS54-204ENST00000416400 FAN1Q9Y2M0 1017 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 SIT1Q9Y3P8 196 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 PCDHB4Q9Y5E5 795 aa6.33□□□□□ -1.4
VPS54-204ENST00000416400 TCAF2A6NFQ2 919 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 GPR39O43194 453 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 GAS7O60861 476 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 CKMP06732 381 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 COL6A2P12110 1019 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 STAT4Q14765 748 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 SKOR2Q2VWA4 1001 aaPredicted RBP6.32□□□□□ -1.4
VPS54-204ENST00000416400 TMEM177Q53S58 311 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 CYP4F22Q6NT55 531 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 OTOP3Q7RTS5 596 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 SPATS2Q86XZ4 545 aaKnown RBP6.32□□□□□ -1.4
VPS54-204ENST00000416400 PIP4K2CQ8TBX8 421 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 PHOSPHO1Q8TCT1 267 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 SMOC1Q9H4F8 434 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 SLC6A20Q9NP91 592 aa6.32□□□□□ -1.4
VPS54-204ENST00000416400 ZKSCAN5Q9Y2L8 839 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms