RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 TBC1D22BQ9NU19 505 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 LRWD1Q9UFC0 647 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 DIS3Q9Y2L1 958 aaKnown RBP16.01■□□□□ 0.15
SKA1-202ENST00000398452 MRVI1Q9Y6F6 885 aa16.01■□□□□ 0.15
SKA1-202ENST00000398452 DNAJC25-GNG10A0A024R161 153 aa16■□□□□ 0.15
SKA1-202ENST00000398452 SOWAHBA6NEL2 793 aa16■□□□□ 0.15
SKA1-202ENST00000398452 MSH4O15457 936 aa16■□□□□ 0.15
SKA1-202ENST00000398452 MYCP01106 439 aaPredicted RBP16■□□□□ 0.15
SKA1-202ENST00000398452 HOXD10P28358 340 aa16■□□□□ 0.15
SKA1-202ENST00000398452 MAP2K5Q13163 448 aa16■□□□□ 0.15
SKA1-202ENST00000398452 PDIA5Q14554 519 aa16■□□□□ 0.15
SKA1-202ENST00000398452 AXDND1Q5T1B0 1012 aaPredicted RBP16■□□□□ 0.15
SKA1-202ENST00000398452 RESP18Q5W5W9 173 aa16■□□□□ 0.15
SKA1-202ENST00000398452 HAUS3Q68CZ6 603 aa16■□□□□ 0.15
SKA1-202ENST00000398452 KCNV1Q6PIU1 500 aa16■□□□□ 0.15
SKA1-202ENST00000398452 ZNF467Q7Z7K2 595 aaPredicted RBP16■□□□□ 0.15
SKA1-202ENST00000398452 IL31RAQ8NI17 732 aa16■□□□□ 0.15
SKA1-202ENST00000398452 ZFP91Q96JP5 570 aaPredicted RBP16■□□□□ 0.15
SKA1-202ENST00000398452 RIT2Q99578 217 aa16■□□□□ 0.15
SKA1-202ENST00000398452 KCNH7Q9NS40 1196 aa16■□□□□ 0.15
SKA1-202ENST00000398452 HOOK1Q9UJC3 728 aaKnown RBP16■□□□□ 0.15
SKA1-202ENST00000398452 KIAA0100Q14667 2235 aaKnown RBP16■□□□□ 0.15
SKA1-202ENST00000398452 IGLV3-22A0A075B6J6 115 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 A0A1B0GVL5 298 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 IPO5O00410 1097 aaKnown RBP15.99■□□□□ 0.15
SKA1-202ENST00000398452 ITGB5P18084 799 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 SYKP43405 635 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 MRPS9P82933 396 aaKnown RBP15.99■□□□□ 0.15
SKA1-202ENST00000398452 FAM160A1Q05DH4 1040 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 ZNF792Q3KQV3 632 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 SEPT14Q6ZU15 432 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 GIMAP8Q8ND71 665 aaPredicted RBP15.99■□□□□ 0.15
SKA1-202ENST00000398452 CYP2W1Q8TAV3 490 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 DDX19AQ9NUU7 478 aaKnown RBP15.99■□□□□ 0.15
SKA1-202ENST00000398452 PKD2L1Q9P0L9 805 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 KCNH3Q9ULD8 1083 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 PTPN22Q9Y2R2 807 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 MYH7BA7E2Y1 1941 aa15.99■□□□□ 0.15
SKA1-202ENST00000398452 EDIL3O43854 480 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 ARP10275 920 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 CHRM1P11229 460 aaPredicted RBP15.98■□□□□ 0.15
SKA1-202ENST00000398452 PFKFB1P16118 471 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 PSMC4P43686 418 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 LACTBP83111 547 aaPredicted RBP15.98■□□□□ 0.15
SKA1-202ENST00000398452 ZRSR1Q15695 479 aaKnown RBP15.98■□□□□ 0.15
SKA1-202ENST00000398452 SPECC1Q5M775 1068 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 NCAPH2Q6IBW4 605 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 SHC4Q6S5L8 630 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 MSL3Q8N5Y2 521 aaKnown RBP15.98■□□□□ 0.15
SKA1-202ENST00000398452 ETNPPLQ8TBG4 499 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 SYMPKQ92797 1274 aaKnown RBP15.98■□□□□ 0.15
SKA1-202ENST00000398452 HAS1Q92839 578 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 SLC5A5Q92911 643 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 LENG9Q96B70 501 aa15.98■□□□□ 0.15
SKA1-202ENST00000398452 INPP4AQ96PE3 977 aaPredicted RBP15.98■□□□□ 0.15
SKA1-202ENST00000398452 AGO4Q9HCK5 861 aaKnown RBP15.98■□□□□ 0.15
SKA1-202ENST00000398452 KDM3AQ9Y4C1 1321 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 SLC26A4O43511 780 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 COBLO75128 1261 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 EDNRBP24530 442 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 KANK3Q6NY19 840 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 CAVIN1Q6NZI2 390 aaKnown RBP15.97■□□□□ 0.15
SKA1-202ENST00000398452 ARMCX2Q7L311 632 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 EEPD1Q7L9B9 569 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 CABP7Q86V35 215 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 CEP57L1Q8IYX8 460 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 IGSF22Q8N9C0 903 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 GPT2Q8TD30 523 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 SNX29Q8TEQ0 813 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 UIMC1Q96RL1 719 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 APBA2Q99767 749 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 ARHGAP39Q9C0H5 1083 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 VTA1Q9NP79 307 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 USP25Q9UHP3 1055 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 SAMM50Q9Y512 469 aa15.97■□□□□ 0.15
SKA1-202ENST00000398452 POTEMA6NI47 508 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 DDX39AO00148 427 aaKnown RBP15.96■□□□□ 0.15
SKA1-202ENST00000398452 CHMP2AO43633 222 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 TGFB3P10600 412 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 LIG1P18858 919 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 CYP2B6P20813 491 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 ICAM3P32942 547 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 NDUFA8P51970 172 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 KRT76Q01546 638 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 GRIN1Q05586 938 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 NEDD9Q14511 834 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 TTLL4Q14679 1199 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 MORN1Q5T089 497 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 CCDC183Q5T5S1 534 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 MIER3Q7Z3K6 550 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 PDILTQ8N807 584 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 IQUBQ8NA54 791 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 CNNM3Q8NE01 707 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 MAML3Q96JK9 1138 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 CCSER1Q9C0I3 900 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 NT5C3AQ9H0P0 336 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 NUP62CLQ9H1M0 184 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 DACT1Q9NYF0 836 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 PCDHB8Q9UN66 801 aa15.96■□□□□ 0.15
SKA1-202ENST00000398452 SYNGAP1Q96PV0 1343 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms