RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 IFT20Q8IY31 132 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 IQCKQ8N0W5 287 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 SH2D3CQ8N5H7 860 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 ZNF713Q8N859 430 aaPredicted RBP14.01□□□□□ -0.17
SHMT1-205ENST00000395684 IFT81Q8WYA0 676 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 PACSIN1Q9BY11 444 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 LRRC27Q9C0I9 530 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 CD209Q9NNX6 404 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 PANK4Q9NVE7 773 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 RNF14Q9UBS8 474 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 ATP6V0A2Q9Y487 856 aa14.01□□□□□ -0.17
SHMT1-205ENST00000395684 PPP1R11O60927 126 aaPredicted RBP14□□□□□ -0.17
SHMT1-205ENST00000395684 HEXIM1O94992 359 aaKnown RBP14□□□□□ -0.17
SHMT1-205ENST00000395684 EIF6P56537 245 aaKnown RBP14□□□□□ -0.17
SHMT1-205ENST00000395684 SKOR1P84550 965 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 ARID5AQ03989 594 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 FAM26FQ5R3K3 315 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 PPP4R3AQ6IN85 833 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 CLEC10AQ8IUN9 316 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 NELFCDQ8IXH7 590 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 ARHGEF1Q92888 912 aaKnown RBP14□□□□□ -0.17
SHMT1-205ENST00000395684 UIMC1Q96RL1 719 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 RUFY1Q96T51 708 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 GPCPD1Q9NPB8 672 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 MTMR4Q9NYA4 1195 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 PCDHA2Q9Y5H9 948 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 SBF2Q86WG5 1849 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 ZNF233A6NK53 670 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 EBAG9O00559 213 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 RNASE9P60153 205 aaKnown RBP14□□□□□ -0.17
SHMT1-205ENST00000395684 NNTQ13423 1086 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 SLC18A3Q16572 532 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 RC3H1Q5TC82 1133 aaKnown RBP14□□□□□ -0.17
SHMT1-205ENST00000395684 MEI1Q5TIA1 1274 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 TADA2BQ86TJ2 420 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 CCDC43Q96MW1 224 aaKnown RBP14□□□□□ -0.17
SHMT1-205ENST00000395684 NUCKS1Q9H1E3 243 aaKnown RBP14□□□□□ -0.17
SHMT1-205ENST00000395684 ADAMTS1Q9UHI8 967 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 DDX25Q9UHL0 483 aaKnown RBP14□□□□□ -0.17
SHMT1-205ENST00000395684 PCDHGC5Q9Y5F6 944 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 FAM169AQ9Y6X4 670 aa14□□□□□ -0.17
SHMT1-205ENST00000395684 A0A087WUV0 522 aaPredicted RBP13.99□□□□□ -0.17
SHMT1-205ENST00000395684 NPHP3-ACAD11A0A0J9YXS1 232 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 E9PMD0 336 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 SSBP05455 408 aaKnown RBP eCLIP13.99□□□□□ -0.17
SHMT1-205ENST00000395684 GPSM2P81274 684 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 CACNB1Q02641 598 aaPredicted RBP13.99□□□□□ -0.17
SHMT1-205ENST00000395684 ENOX2Q16206 610 aaKnown RBP13.99□□□□□ -0.17
SHMT1-205ENST00000395684 TRIM59Q8IWR1 403 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 PIK3R5Q8WYR1 880 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 KRT12Q99456 494 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.99□□□□□ -0.17
SHMT1-205ENST00000395684 JMJD4Q9H9V9 463 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 POLD4Q9HCU8 107 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 TNRC6CQ9HCJ0 1690 aaKnown RBP13.99□□□□□ -0.17
SHMT1-205ENST00000395684 COL24A1Q17RW2 1714 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 NRAPQ86VF7 1730 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 SNHG28P0DPA3 235 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 CLK2P49760 499 aaKnown RBP13.99□□□□□ -0.17
SHMT1-205ENST00000395684 PDCLQ13371 301 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 RAPGEF1Q13905 1077 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 KIAA0753Q2KHM9 967 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 FAM133AQ8N9E0 248 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 CASKIN2Q8WXE0 1202 aa13.99□□□□□ -0.17
SHMT1-205ENST00000395684 INPP4AQ96PE3 977 aaPredicted RBP13.99□□□□□ -0.17
SHMT1-205ENST00000395684 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.99□□□□□ -0.17
SHMT1-205ENST00000395684 CPP00450 1065 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 HOXA7P31268 230 aaPredicted RBP13.98□□□□□ -0.17
SHMT1-205ENST00000395684 ATP1A2P50993 1020 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 GUCY2FP51841 1108 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 ASPRV1Q53RT3 343 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 CERS3Q8IU89 383 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 SCFD1Q8WVM8 642 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 CEP63Q96MT8 703 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 PCDHA12Q9UN75 941 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 SAMM50Q9Y512 469 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 CDK5RAP2Q96SN8 1893 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 AKR1B1P15121 316 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 MARSP56192 900 aaKnown RBP13.98□□□□□ -0.17
SHMT1-205ENST00000395684 SEPT2Q15019 361 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 TTBK2Q6IQ55 1244 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 C15orf52Q6ZUT6 534 aaKnown RBP13.98□□□□□ -0.17
SHMT1-205ENST00000395684 ADGRF4Q8IZF3 695 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 KCTD10Q9H3F6 313 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 AIPL1Q9NZN9 384 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 KIAA1024Q9UPX6 916 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 ZNF831Q5JPB2 1677 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 GRID2IPA4D2P6 1211 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 PLCG2P16885 1265 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 KLHL30Q0D2K2 578 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 PAK2Q13177 524 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 FAM98CQ17RN3 349 aaKnown RBP13.98□□□□□ -0.17
SHMT1-205ENST00000395684 MFSD14BQ5SR56 506 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 CFAP58Q5T655 872 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 MICALL1Q8N3F8 863 aa13.98□□□□□ -0.17
SHMT1-205ENST00000395684 FAM163AQ96GL9 167 aaPredicted RBP13.98□□□□□ -0.17
SHMT1-205ENST00000395684 RTCBQ9Y3I0 505 aaKnown RBP13.98□□□□□ -0.17
SHMT1-205ENST00000395684 PNMA6FA0A0J9YX94 578 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 SHTN1A0MZ66 631 aa13.97□□□□□ -0.17
SHMT1-205ENST00000395684 CDC37Q16543 378 aaPredicted RBP13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms