RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 NOP56O00567 594 aaKnown RBP24.72■■□□□ 1.55
CLN3-207ENST00000395653 USP11P51784 963 aa24.72■■□□□ 1.55
CLN3-207ENST00000395653 KRT25Q7Z3Z0 450 aa24.72■■□□□ 1.55
CLN3-207ENST00000395653 TMX3Q96JJ7 454 aa24.72■■□□□ 1.55
CLN3-207ENST00000395653 DCDC2CA8MYV0 355 aa24.71■■□□□ 1.55
CLN3-207ENST00000395653 ARP10275 920 aa24.71■■□□□ 1.55
CLN3-207ENST00000395653 SETQ01105 290 aaPredicted RBP24.71■■□□□ 1.55
CLN3-207ENST00000395653 FAM126BQ8IXS8 530 aa24.71■■□□□ 1.55
CLN3-207ENST00000395653 TBCKQ8TEA7 893 aa24.71■■□□□ 1.55
CLN3-207ENST00000395653 ZMYND8Q9ULU4 1186 aaPredicted RBP24.71■■□□□ 1.55
CLN3-207ENST00000395653 F2P00734 622 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 CLTBP09497 229 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 TRIM29Q14134 588 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 NONOQ15233 471 aaKnown RBP eCLIP24.7■■□□□ 1.55
CLN3-207ENST00000395653 PLA2G4DQ86XP0 818 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 KAT2BQ92831 832 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 GPR20Q99678 358 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 KATNAL1Q9BW62 490 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 AGO4Q9HCK5 861 aaKnown RBP24.7■■□□□ 1.55
CLN3-207ENST00000395653 BRMS1Q9HCU9 246 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 PDLIM7Q9NR12 457 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 PKD2L1Q9P0L9 805 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 PRKAG2Q9UGJ0 569 aa24.7■■□□□ 1.55
CLN3-207ENST00000395653 NFASCO94856 1347 aa24.7■■□□□ 1.54
CLN3-207ENST00000395653 MMP1P03956 469 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 SYN1P17600 705 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 KRT2P35908 639 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 DOCK5Q9H7D0 1870 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 CCDC194A0A1B0GVG4 234 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 TLR3O15455 904 aaKnown RBP24.69■■□□□ 1.54
CLN3-207ENST00000395653 EDIL3O43854 480 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 PTPN11Q06124 597 aaPredicted RBP24.69■■□□□ 1.54
CLN3-207ENST00000395653 FAAP100Q0VG06 881 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 NBPF20Q3BBV1 942 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 KRT40Q6A162 431 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 NFRKBQ6P4R8 1299 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 OXER1Q8TDS5 423 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 SDF4Q9BRK5 362 aa24.69■■□□□ 1.54
CLN3-207ENST00000395653 JPH1Q9HDC5 661 aaPredicted RBP24.69■■□□□ 1.54
CLN3-207ENST00000395653 CD4P01730 458 aa24.68■■□□□ 1.54
CLN3-207ENST00000395653 ZNF286BP0CG31 522 aa24.68■■□□□ 1.54
CLN3-207ENST00000395653 ITGB3BPQ13352 177 aaPredicted RBP24.68■■□□□ 1.54
CLN3-207ENST00000395653 C16orf70Q9BSU1 422 aa24.68■■□□□ 1.54
CLN3-207ENST00000395653 PRDM5Q9NQX1 630 aaPredicted RBP24.68■■□□□ 1.54
CLN3-207ENST00000395653 HAS3O00219 553 aa24.67■■□□□ 1.54
CLN3-207ENST00000395653 LGALS2P05162 132 aa24.67■■□□□ 1.54
CLN3-207ENST00000395653 SP4Q02446 784 aa24.67■■□□□ 1.54
CLN3-207ENST00000395653 PRR16Q569H4 304 aa24.67■■□□□ 1.54
CLN3-207ENST00000395653 MOXD1Q6UVY6 613 aa24.67■■□□□ 1.54
CLN3-207ENST00000395653 FAM184AQ8NB25 1140 aa24.67■■□□□ 1.54
CLN3-207ENST00000395653 LENG9Q96B70 501 aa24.67■■□□□ 1.54
CLN3-207ENST00000395653 C8orf76Q96K31 380 aa24.67■■□□□ 1.54
CLN3-207ENST00000395653 SLC9A2Q9UBY0 812 aa24.67■■□□□ 1.54
CLN3-207ENST00000395653 CYP3A7-CYP3A51PA0A087WV96 503 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 KIAA0355O15063 1070 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 CYP3A7P24462 503 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 PSEN2P49810 448 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 INF2Q27J81 1249 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 SH3RF1Q7Z6J0 888 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 SESTD1Q86VW0 696 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 DIS3L2Q8IYB7 885 aaKnown RBP24.66■■□□□ 1.54
CLN3-207ENST00000395653 SEPT1Q8WYJ6 367 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 TNFRSF25Q93038 417 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 ZNF577Q9BSK1 485 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 TMEM39AQ9NV64 488 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 TBX21Q9UL17 535 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 TELO2Q9Y4R8 837 aa24.66■■□□□ 1.54
CLN3-207ENST00000395653 TRIM43BA6NCK2 446 aa24.65■■□□□ 1.54
CLN3-207ENST00000395653 IPO5O00410 1097 aaKnown RBP24.65■■□□□ 1.54
CLN3-207ENST00000395653 FOSBP53539 338 aa24.65■■□□□ 1.54
CLN3-207ENST00000395653 NR5A1Q13285 461 aa24.65■■□□□ 1.54
CLN3-207ENST00000395653 MFSD10Q14728 455 aa24.65■■□□□ 1.54
CLN3-207ENST00000395653 KIAA0753Q2KHM9 967 aa24.65■■□□□ 1.54
CLN3-207ENST00000395653 FAM47CQ5HY64 1035 aa24.65■■□□□ 1.54
CLN3-207ENST00000395653 PIK3AP1Q6ZUJ8 805 aa24.65■■□□□ 1.54
CLN3-207ENST00000395653 TRIM43Q96BQ3 446 aaPredicted RBP24.65■■□□□ 1.54
CLN3-207ENST00000395653 TBC1D22BQ9NU19 505 aa24.65■■□□□ 1.54
CLN3-207ENST00000395653 KIF3AQ9Y496 699 aa24.65■■□□□ 1.54
CLN3-207ENST00000395653 GSTTP1A0A1W2PQM5 241 aa24.64■■□□□ 1.54
CLN3-207ENST00000395653 H3BRB1 525 aa24.64■■□□□ 1.54
CLN3-207ENST00000395653 B4GALT4O60513 344 aa24.64■■□□□ 1.54
CLN3-207ENST00000395653 TCF7P36402 384 aaPredicted RBP24.64■■□□□ 1.54
CLN3-207ENST00000395653 CHMP4BP1P59074 171 aa24.64■■□□□ 1.54
CLN3-207ENST00000395653 Q4G0T1 1027 aa24.64■■□□□ 1.54
CLN3-207ENST00000395653 NEK8Q86SG6 692 aa24.64■■□□□ 1.54
CLN3-207ENST00000395653 MBOAT7Q96N66 472 aa24.64■■□□□ 1.54
CLN3-207ENST00000395653 TUT1Q9H6E5 874 aaKnown RBP24.64■■□□□ 1.54
CLN3-207ENST00000395653 BTBD18B2RXH4 712 aa24.63■■□□□ 1.53
CLN3-207ENST00000395653 DHX15O43143 795 aaKnown RBP24.63■■□□□ 1.53
CLN3-207ENST00000395653 TDP2O95551 362 aa24.63■■□□□ 1.53
CLN3-207ENST00000395653 SUPT20HL2P0C7V6 817 aa24.63■■□□□ 1.53
CLN3-207ENST00000395653 SAFBQ15424 915 aaKnown RBP eCLIP24.63■■□□□ 1.53
CLN3-207ENST00000395653 FBXO18Q8NFZ0 1043 aa24.63■■□□□ 1.53
CLN3-207ENST00000395653 TRPV6Q9H1D0 765 aa24.63■■□□□ 1.53
CLN3-207ENST00000395653 ZNF215Q9UL58 517 aaPredicted RBP24.63■■□□□ 1.53
CLN3-207ENST00000395653 LTBP2Q14767 1821 aa24.63■■□□□ 1.53
CLN3-207ENST00000395653 LETM2Q2VYF4 491 aa24.62■■□□□ 1.53
CLN3-207ENST00000395653 EARS2Q5JPH6 523 aaKnown RBP24.62■■□□□ 1.53
CLN3-207ENST00000395653 UTP14CQ5TAP6 766 aaKnown RBP24.62■■□□□ 1.53
CLN3-207ENST00000395653 C7orf31Q8N865 590 aa24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms