RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 FCHSD1Q86WN1 690 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 UTP6Q9NYH9 597 aaKnown RBP9.02□□□□□ -0.97
LIMS1-203ENST00000393310 CD207Q9UJ71 328 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 GABRQQ9UN88 632 aa9.02□□□□□ -0.97
LIMS1-203ENST00000393310 ST18O60284 1047 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 CAND2O75155 1236 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 VAMP4O75379 141 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 LAG3P18627 525 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 PFKPQ01813 784 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 KRT32Q14532 448 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 PTGISQ16647 500 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 KLHL10Q6JEL2 608 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 TDRD5Q8NAT2 981 aaKnown RBP9.01□□□□□ -0.97
LIMS1-203ENST00000393310 ATG4CQ96DT6 458 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 BCO2Q9BYV7 579 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 KCNQ5Q9NR82 932 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 PPP1R9AQ9ULJ8 1098 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 CSPG5O95196 566 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 SMC2O95347 1197 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 ATP8B2P98198 1209 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 LRRC24Q50LG9 513 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 XRRA1Q6P2D8 792 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 KLHL23Q8NBE8 558 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 ATP6V1E2Q96A05 226 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 RNF25Q96BH1 459 aaPredicted RBP9.01□□□□□ -0.97
LIMS1-203ENST00000393310 IWS1Q96ST2 819 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 C1orf112Q9NSG2 853 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 PHLPP2Q6ZVD8 1323 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 TRAPPC3O43617 180 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 ERLIN2O94905 339 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 URODP06132 367 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 BLVRAP53004 296 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 UBE3CQ15386 1083 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 PDXDC1Q6P996 788 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 HOMER1Q86YM7 354 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 KRT222Q8N1A0 295 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 ARL10Q8N8L6 244 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 GBP7Q8N8V2 638 aaPredicted RBP9.01□□□□□ -0.97
LIMS1-203ENST00000393310 USP26Q9BXU7 913 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 KINO60870 393 aaKnown RBP9.01□□□□□ -0.97
LIMS1-203ENST00000393310 GNA11P29992 359 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 NRLP54845 237 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 NR1H3Q13133 447 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 BYSLQ13895 437 aaKnown RBP9.01□□□□□ -0.97
LIMS1-203ENST00000393310 MIS18BP1Q6P0N0 1132 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 SKA1Q96BD8 255 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 SLITRK6Q9H5Y7 841 aa9.01□□□□□ -0.97
LIMS1-203ENST00000393310 LTN1O94822 1766 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 ERLIN1O75477 346 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 KRT18P05783 430 aaKnown RBP9□□□□□ -0.97
LIMS1-203ENST00000393310 POLA2Q14181 598 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 KCNA10Q16322 511 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 ANKRD45Q5TZF3 282 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 OTUD6AQ7L8S5 288 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 ZNF467Q7Z7K2 595 aaPredicted RBP9□□□□□ -0.97
LIMS1-203ENST00000393310 CNNM3Q8NE01 707 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 SPATA33Q96N06 139 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 BMP2KQ9NSY1 1161 aaPredicted RBP9□□□□□ -0.97
LIMS1-203ENST00000393310 PHF24Q9UPV7 400 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 FLT3P36888 993 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 RWDD2BP57060 319 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 C3orf67Q6ZVT6 689 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 ARMCX2Q7L311 632 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 METTL13Q8N6R0 699 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 USP33Q8TEY7 942 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 MAP3K20Q9NYL2 800 aaKnown RBP9□□□□□ -0.97
LIMS1-203ENST00000393310 C6orf203Q9P0P8 240 aaPredicted RBP9□□□□□ -0.97
LIMS1-203ENST00000393310 BCAR3O75815 825 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 HOXB8P17481 243 aaPredicted RBP9□□□□□ -0.97
LIMS1-203ENST00000393310 PREPLQ4J6C6 727 aaPredicted RBP9□□□□□ -0.97
LIMS1-203ENST00000393310 CCDC149Q6ZUS6 474 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 CCDC80Q76M96 950 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 SH3RF3Q8TEJ3 882 aaPredicted RBP9□□□□□ -0.97
LIMS1-203ENST00000393310 ZNF558Q96NG5 402 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 NELL2Q99435 816 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 PUS3Q9BZE2 481 aaKnown RBP9□□□□□ -0.97
LIMS1-203ENST00000393310 OGFRQ9NZT2 677 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 GABBR1Q9UBS5 961 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 PCDHB9Q9Y5E1 797 aa9□□□□□ -0.97
LIMS1-203ENST00000393310 CDK8P49336 464 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 DEUP1Q05D60 604 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 KMT5BQ4FZB7 885 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 CCDC70Q6NSX1 233 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 APOBEC3HQ6NTF7 200 aaKnown RBP8.99□□□□□ -0.97
LIMS1-203ENST00000393310 DNERQ8NFT8 737 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 EVI5LQ96CN4 794 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 RSPH9Q9H1X1 276 aaPredicted RBP8.99□□□□□ -0.97
LIMS1-203ENST00000393310 ZNF112Q9UJU3 913 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 STXBP3O00186 592 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 ASGR1P07306 291 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 PAX7P23759 505 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 YARSP54577 528 aaKnown RBP8.99□□□□□ -0.97
LIMS1-203ENST00000393310 ZBTB8OSQ8IWT0 167 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 SMARCAD1Q9H4L7 1026 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 ARMT1Q9H993 441 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 HMG20BQ9P0W2 317 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 ASTN2O75129 1339 aaPredicted RBP8.99□□□□□ -0.97
LIMS1-203ENST00000393310 F5H6K3 240 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 MAGEB2O15479 319 aa8.99□□□□□ -0.97
LIMS1-203ENST00000393310 RLBP1P12271 317 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms