RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 MXRA8Q9BRK3 442 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.92□□□□□ -0.18
CIITA-202ENST00000381835 V9GYY5 206 aaPredicted RBP13.92□□□□□ -0.18
CIITA-202ENST00000381835 FRMPD4Q14CM0 1322 aa13.92□□□□□ -0.18
CIITA-202ENST00000381835 ZNFX1Q9P2E3 1918 aaKnown RBP13.91□□□□□ -0.18
CIITA-202ENST00000381835 FOXN1O15353 648 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 ACTN4O43707 911 aaKnown RBP13.91□□□□□ -0.18
CIITA-202ENST00000381835 ITGB5P18084 799 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 CNTN2Q02246 1040 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 GRM1Q13255 1194 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 GRAMD1CQ8IYS0 662 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 IQUBQ8NA54 791 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 NSUN6Q8TEA1 469 aaKnown RBP13.91□□□□□ -0.18
CIITA-202ENST00000381835 ERO1AQ96HE7 468 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 FAM20AQ96MK3 541 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 CCSER1Q9C0I3 900 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 DISC1Q9NRI5 854 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 IMPACTQ9P2X3 320 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 PFASO15067 1338 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 TMEM88BA6NKF7 163 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 KIF2AO00139 706 aaPredicted RBP13.91□□□□□ -0.18
CIITA-202ENST00000381835 MEIS1O00470 390 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 ARP10275 920 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 PNOCQ13519 176 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 ZNF771Q7L3S4 317 aaPredicted RBP13.91□□□□□ -0.18
CIITA-202ENST00000381835 GPRC5AQ8NFJ5 357 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 GTF3C2Q8WUA4 911 aaPredicted RBP13.91□□□□□ -0.18
CIITA-202ENST00000381835 WDR11Q9BZH6 1224 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 KCND1Q9NSA2 647 aa13.91□□□□□ -0.18
CIITA-202ENST00000381835 KIAA1217Q5T5P2 1943 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 MANSC4A6NHS7 340 aaPredicted RBP13.9□□□□□ -0.18
CIITA-202ENST00000381835 NR3C2P08235 984 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 SLC10A3P09131 477 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 SLFN14P0C7P3 912 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 STAT6P42226 847 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 SETQ01105 290 aaPredicted RBP13.9□□□□□ -0.18
CIITA-202ENST00000381835 GABPB1Q06547 395 aaPredicted RBP13.9□□□□□ -0.18
CIITA-202ENST00000381835 E2F4Q16254 413 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 RRAGBQ5VZM2 374 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 PAXIP1Q6ZW49 1069 aaPredicted RBP13.9□□□□□ -0.18
CIITA-202ENST00000381835 PARK7Q99497 189 aaKnown RBP13.9□□□□□ -0.18
CIITA-202ENST00000381835 MMTAG2Q9BU76 263 aaKnown RBP13.9□□□□□ -0.18
CIITA-202ENST00000381835 PORCNQ9H237 461 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 EFCC1Q9HA90 598 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 PKD2L1Q9P0L9 805 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 KIAA1468Q9P260 1216 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 TESPA1A2RU30 521 aaPredicted RBP13.9□□□□□ -0.18
CIITA-202ENST00000381835 IGF2BP3O00425 579 aaKnown RBP eCLIP13.9□□□□□ -0.18
CIITA-202ENST00000381835 SMC2O95347 1197 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 SLU7O95391 586 aaKnown RBP13.9□□□□□ -0.18
CIITA-202ENST00000381835 AFMP43652 599 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 KMT5BQ4FZB7 885 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 LRCH2Q5VUJ6 765 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 KRT79Q5XKE5 535 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 SNX29Q8TEQ0 813 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 STAMQ92783 540 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 CALML4Q96GE6 196 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 PYM1Q9BRP8 204 aaKnown RBP13.9□□□□□ -0.18
CIITA-202ENST00000381835 ZNF577Q9BSK1 485 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 MAF1Q9H063 256 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 KCNH7Q9NS40 1196 aa13.9□□□□□ -0.18
CIITA-202ENST00000381835 HOOK1Q9UJC3 728 aaKnown RBP13.9□□□□□ -0.18
CIITA-202ENST00000381835 POTEB2H3BUK9 544 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 CCND2P30279 289 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 COPB2P35606 906 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 GCLCP48506 637 aaPredicted RBP13.89□□□□□ -0.19
CIITA-202ENST00000381835 POSTNQ15063 836 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 DPCR1Q3MIW9 517 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 NCAPH2Q6IBW4 605 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 KANK3Q6NY19 840 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 NUDT12Q9BQG2 462 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 UBIAD1Q9Y5Z9 338 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 IPO5O00410 1097 aaKnown RBP13.89□□□□□ -0.19
CIITA-202ENST00000381835 PGK2P07205 417 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 PRR29P0C7W0 189 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 PLCG1P19174 1290 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 TPM4P67936 248 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 SPIRE1Q08AE8 756 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 MTMR1Q13613 665 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 KCTD2Q14681 263 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 ELF2Q15723 593 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 TMC6Q7Z403 805 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 VSIG10LQ86VR7 867 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 CCDC34Q96HJ3 373 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 CDK5RAP3Q96JB5 506 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 MMP19Q99542 508 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 BPIFA3Q9BQP9 254 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 XPO4Q9C0E2 1151 aaKnown RBP13.89□□□□□ -0.19
CIITA-202ENST00000381835 MROH8Q9H579 483 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 JADE2Q9NQC1 790 aa13.89□□□□□ -0.19
CIITA-202ENST00000381835 PCNTO95613 3336 aa13.88□□□□□ -0.19
CIITA-202ENST00000381835 FAM155AB1AL88 458 aaPredicted RBP13.88□□□□□ -0.19
CIITA-202ENST00000381835 BIN1O00499 593 aa13.88□□□□□ -0.19
CIITA-202ENST00000381835 GAS7O60861 476 aa13.88□□□□□ -0.19
CIITA-202ENST00000381835 YY1P25490 414 aa13.88□□□□□ -0.19
CIITA-202ENST00000381835 CCNA1P78396 465 aa13.88□□□□□ -0.19
CIITA-202ENST00000381835 MDM2Q00987 491 aaPredicted RBP13.88□□□□□ -0.19
CIITA-202ENST00000381835 NAALADL2Q58DX5 795 aa13.88□□□□□ -0.19
CIITA-202ENST00000381835 PDXDC2PQ6P474 469 aa13.88□□□□□ -0.19
CIITA-202ENST00000381835 KRT222Q8N1A0 295 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms