RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 GRID2IPA4D2P6 1211 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 PALM3A6NDB9 673 aaPredicted RBP20.33■□□□□ 0.85
CCDC3-201ENST00000378825 EDIL3O43854 480 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 FLT3P36888 993 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 AMPD3Q01432 767 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 KIAA0753Q2KHM9 967 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 UNC13DQ70J99 1090 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 NELFCDQ8IXH7 590 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 FAM133AQ8N9E0 248 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 NGLY1Q96IV0 654 aa20.33■□□□□ 0.85
CCDC3-201ENST00000378825 RAPGEF1Q13905 1077 aa20.33■□□□□ 0.84
CCDC3-201ENST00000378825 UAP1Q16222 522 aaPredicted RBP20.33■□□□□ 0.84
CCDC3-201ENST00000378825 AP1M1Q9BXS5 423 aa20.33■□□□□ 0.84
CCDC3-201ENST00000378825 ECHS1P30084 290 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 SF3A3Q12874 501 aaKnown RBP eCLIP20.32■□□□□ 0.84
CCDC3-201ENST00000378825 SF3B2Q13435 895 aaKnown RBP20.32■□□□□ 0.84
CCDC3-201ENST00000378825 QPCTQ16769 361 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 PIGSQ96S52 555 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 MAGEF1Q9HAY2 307 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 RREB1Q92766 1687 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 LAMB1P07942 1786 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 DCDC2CA8MYV0 355 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 FSBPO95073 299 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 NAB2Q15742 525 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 GLE1Q53GS7 698 aaKnown RBP20.32■□□□□ 0.84
CCDC3-201ENST00000378825 SLC10A5Q5PT55 438 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 MEI1Q5TIA1 1274 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 SFMBT2Q5VUG0 894 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 CABS1Q96KC9 395 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 NARFQ9UHQ1 456 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 SCN7AQ01118 1682 aa20.32■□□□□ 0.84
CCDC3-201ENST00000378825 TRAF5O00463 557 aa20.31■□□□□ 0.84
CCDC3-201ENST00000378825 KCNK3O14649 394 aa20.31■□□□□ 0.84
CCDC3-201ENST00000378825 CDC37Q16543 378 aaPredicted RBP20.31■□□□□ 0.84
CCDC3-201ENST00000378825 SLC9C1Q4G0N8 1177 aa20.31■□□□□ 0.84
CCDC3-201ENST00000378825 GUF1Q8N442 669 aaKnown RBP20.31■□□□□ 0.84
CCDC3-201ENST00000378825 TGFBRAP1Q8WUH2 860 aa20.31■□□□□ 0.84
CCDC3-201ENST00000378825 BCCIPQ9P287 314 aaKnown RBP eCLIP20.31■□□□□ 0.84
CCDC3-201ENST00000378825 LAMB2P55268 1798 aa20.31■□□□□ 0.84
CCDC3-201ENST00000378825 SSU72P8A0A1W2PR75 194 aa20.31■□□□□ 0.84
CCDC3-201ENST00000378825 HSD17B3P37058 310 aa20.31■□□□□ 0.84
CCDC3-201ENST00000378825 DZIP1Q86YF9 867 aaKnown RBP20.31■□□□□ 0.84
CCDC3-201ENST00000378825 CCDC13Q8IYE1 715 aa20.31■□□□□ 0.84
CCDC3-201ENST00000378825 RBAK-RBAKDNI3L0D1 243 aa20.3■□□□□ 0.84
CCDC3-201ENST00000378825 ACTN1P12814 892 aa20.3■□□□□ 0.84
CCDC3-201ENST00000378825 CCDC40Q4G0X9 1142 aa20.3■□□□□ 0.84
CCDC3-201ENST00000378825 KRT25Q7Z3Z0 450 aa20.3■□□□□ 0.84
CCDC3-201ENST00000378825 CCDC91Q7Z6B0 441 aa20.3■□□□□ 0.84
CCDC3-201ENST00000378825 MAPKAPK5Q8IW41 473 aa20.3■□□□□ 0.84
CCDC3-201ENST00000378825 RNF10Q8N5U6 811 aaKnown RBP20.3■□□□□ 0.84
CCDC3-201ENST00000378825 COA7Q96BR5 231 aa20.3■□□□□ 0.84
CCDC3-201ENST00000378825 ANKIB1Q9P2G1 1089 aa20.3■□□□□ 0.84
CCDC3-201ENST00000378825 SSBP05455 408 aaKnown RBP eCLIP20.3■□□□□ 0.84
CCDC3-201ENST00000378825 USP38Q8NB14 1042 aa20.3■□□□□ 0.84
CCDC3-201ENST00000378825 ARHGEF1Q92888 912 aaKnown RBP20.3■□□□□ 0.84
CCDC3-201ENST00000378825 CDK5RAP3Q96JB5 506 aa20.3■□□□□ 0.84
CCDC3-201ENST00000378825 NPHP3-ACAD11A0A0J9YXS1 232 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 GSCP56915 257 aaPredicted RBP20.29■□□□□ 0.84
CCDC3-201ENST00000378825 ACTN3Q08043 901 aaPredicted RBP20.29■□□□□ 0.84
CCDC3-201ENST00000378825 CALCRLQ16602 461 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 TPTE2Q6XPS3 522 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 MREGQ8N565 214 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 SNX29Q8TEQ0 813 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 DDX47Q9H0S4 455 aaKnown RBP20.29■□□□□ 0.84
CCDC3-201ENST00000378825 CNOT8Q9UFF9 292 aaKnown RBP20.29■□□□□ 0.84
CCDC3-201ENST00000378825 ATP6V0A2Q9Y487 856 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 ATP2C2O75185 946 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 GNAQP50148 359 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 COBLL1Q53SF7 1204 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 ZNF444Q8N0Y2 327 aaPredicted RBP20.29■□□□□ 0.84
CCDC3-201ENST00000378825 CYFIP2Q96F07 1278 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 MTMR9Q96QG7 549 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 NYXQ9GZU5 481 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 TMBIM4Q9HC24 238 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 CCNL1Q9UK58 526 aaPredicted RBP20.29■□□□□ 0.84
CCDC3-201ENST00000378825 MYH4Q9Y623 1939 aa20.29■□□□□ 0.84
CCDC3-201ENST00000378825 RPS6KA4O75676 772 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 SERPING1P05155 500 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 RASA1P20936 1047 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 TM4SF1P30408 202 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 MAP2K2P36507 400 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 SEMA3FQ13275 785 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 NFIXQ14938 502 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 CNTNAP4Q9C0A0 1308 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 CXorf56Q9H5V9 222 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 CEP72Q9P209 647 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 PCDHGC5Q9Y5F6 944 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 FRMPD2Q68DX3 1309 aaPredicted RBP20.28■□□□□ 0.84
CCDC3-201ENST00000378825 H0YGN5 161 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 ITGA4P13612 1032 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 SLC18A3Q16572 532 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 GALNT17Q6IS24 598 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 CD302Q8IX05 232 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 RAD54LQ92698 747 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 COL4A3BPQ9Y5P4 624 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 NFS1Q9Y697 457 aa20.28■□□□□ 0.84
CCDC3-201ENST00000378825 FAM107AO95990 144 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 HSPA9P38646 679 aaKnown RBP20.27■□□□□ 0.84
CCDC3-201ENST00000378825 LRRC63Q05C16 580 aa20.27■□□□□ 0.84
CCDC3-201ENST00000378825 REXO1Q8N1G1 1221 aaKnown RBP20.27■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms