RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 DSG1Q02413 1049 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 NEK8Q86SG6 692 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 KIAA0825Q8IV33 1275 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 SIX5Q8N196 739 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 SCG3Q8WXD2 468 aaKnown RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 DHX38Q92620 1227 aaKnown RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 KRT84Q9NSB2 600 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 STON1Q9Y6Q2 735 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 FHOD3Q2V2M9 1422 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 TATP17735 454 aaPredicted RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 AKAP5P24588 427 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 BCAP31P51572 246 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 RASGRF1Q13972 1273 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 SH3BP5LQ7L8J4 393 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 C19orf18Q8NEA5 215 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 LIMA1Q9UHB6 759 aaKnown RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 CARD8Q9Y2G2 431 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 IPPQ9Y573 584 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 VWA3AA6NCI4 1184 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 HEXIM1O94992 359 aaKnown RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.39□□□□□ -0.91
LIG3-202ENST00000378526 VTI1AQ96AJ9 217 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 CEP95Q96GE4 821 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 PANX2Q96RD6 677 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 PARD6BQ9BYG5 372 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 DPH5Q9H2P9 285 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 CABP5Q9NP86 173 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 SMYD2Q9NRG4 433 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 SPATA2Q9UM82 520 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 DIS3Q9Y2L1 958 aaKnown RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 RBM8AQ9Y5S9 174 aaKnown RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 TCHHQ07283 1943 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 MYOM3Q5VTT5 1437 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 EFR3AQ14156 821 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 USH1GQ495M9 461 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 NAIF1Q69YI7 327 aaPredicted RBP9.39□□□□□ -0.91
LIG3-202ENST00000378526 PCGF5Q86SE9 256 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 ARL10Q8N8L6 244 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 RMDN1Q96DB5 314 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 FAM161BQ96MY7 647 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 FTOQ9C0B1 505 aaKnown RBP eCLIP9.39□□□□□ -0.91
LIG3-202ENST00000378526 WDR97A6NE52 1622 aa9.39□□□□□ -0.91
LIG3-202ENST00000378526 ADKP55263 362 aaKnown RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 KRT17Q04695 432 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 RCSD1Q6JBY9 416 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 KIRREL3Q8IZU9 778 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 SNRNP27Q8WVK2 155 aaKnown RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 SNF8Q96H20 258 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 GOLPH3LQ9H4A5 285 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 UBA2Q9UBT2 640 aaPredicted RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 CAND2O75155 1236 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 ZCWPW2Q504Y3 356 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 BSPRYQ5W0U4 402 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 FAM81BQ96LP2 452 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 INTS13Q9NVM9 706 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 PNMA8CA0A1B0GUJ8 204 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 SGK1O00141 431 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 ATF7P17544 494 aaPredicted RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 PPP2R2AP63151 447 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 TAGAPQ8N103 731 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 SLC26A7Q8TE54 656 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 MAGOHBQ96A72 148 aaKnown RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 EPN3Q9H201 632 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 MSR1P21757 451 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 PURAQ00577 322 aaKnown RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 ATP11CQ8NB49 1132 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 UVRAGQ9P2Y5 699 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 TTLL3Q9Y4R7 772 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 ERBINQ96RT1 1412 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 HAUS5O94927 633 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 ECEL1O95672 775 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 STARD3NLO95772 234 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 FGD2Q7Z6J4 655 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 STKLD1Q8NE28 680 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 DDX54Q8TDD1 881 aaKnown RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 NT5C3AQ9H0P0 336 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 CCDC59Q9P031 241 aaKnown RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 R3HDM2Q9Y2K5 976 aaKnown RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 SBNO1A3KN83 1393 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 KCNJ18B7U540 433 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 IMPDH2P12268 514 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 TMPOP42166 694 aaKnown RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 KCNJ12Q14500 433 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 CCDC127Q96BQ5 260 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 DEPDC7Q96QD5 511 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 BBS2Q9BXC9 721 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 VAT1LQ9HCJ6 419 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 SOGA1O94964 1423 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 KPNA7A9QM74 516 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 SEC31AO94979 1220 aaKnown RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 ABCB1P08183 1280 aaPredicted RBP9.38□□□□□ -0.91
LIG3-202ENST00000378526 AK2P54819 239 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 BNC1Q01954 994 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 TBC1D9BQ66K14 1250 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 NLRP2Q9NX02 1062 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 DLGAP2Q9P1A6 1054 aa9.38□□□□□ -0.91
LIG3-202ENST00000378526 A0A0G2JND7 137 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 CENPXA8MT69 81 aa9.37□□□□□ -0.91
LIG3-202ENST00000378526 GNAT3A8MTJ3 354 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms