RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 CAGE1Q8TC20 777 aa19.25■□□□□ 0.67
HMGN4-201ENST00000377575 RNF26Q9BY78 433 aaPredicted RBP19.25■□□□□ 0.67
HMGN4-201ENST00000377575 ANO3Q9BYT9 981 aa19.25■□□□□ 0.67
HMGN4-201ENST00000377575 UPF3BQ9BZI7 483 aaKnown RBP19.25■□□□□ 0.67
HMGN4-201ENST00000377575 ESYT2A0FGR8 921 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 MAFGO15525 162 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 LGALS2P05162 132 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 IFNAR1P17181 557 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 RFC2P35250 354 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 ZNF697Q5TEC3 545 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 ZNF365Q70YC5 407 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 C16orf59Q7L2K0 433 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 PHKBQ93100 1093 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 SCLYQ96I15 445 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 GPR20Q99678 358 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 C16orf70Q9BSU1 422 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 RNF39Q9H2S5 420 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 PDRG1Q9NUG6 133 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 HDAC6Q9UBN7 1215 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 UBIAD1Q9Y5Z9 338 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 KAT6AQ92794 2004 aa19.24■□□□□ 0.67
HMGN4-201ENST00000377575 H3BRB1 525 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 ITGB5P18084 799 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 CLK2P49760 499 aaKnown RBP19.23■□□□□ 0.67
HMGN4-201ENST00000377575 ANAPC15P60006 121 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 CCT2P78371 535 aaKnown RBP19.23■□□□□ 0.67
HMGN4-201ENST00000377575 NTRK3Q16288 839 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 MCTP2Q6DN12 878 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 Q7L0L9 218 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 TRIM22Q8IYM9 498 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 CCDC148Q8NFR7 591 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 HERVK_113Q902F9 699 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 ZNF274Q96GC6 653 aaPredicted RBP19.23■□□□□ 0.67
HMGN4-201ENST00000377575 SLC26A6Q9BXS9 759 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 TUT1Q9H6E5 874 aaKnown RBP19.23■□□□□ 0.67
HMGN4-201ENST00000377575 C6orf50Q9HD87 102 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 JADE2Q9NQC1 790 aa19.23■□□□□ 0.67
HMGN4-201ENST00000377575 ZNF215Q9UL58 517 aaPredicted RBP19.23■□□□□ 0.67
HMGN4-201ENST00000377575 GBF1Q92538 1859 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.22■□□□□ 0.67
HMGN4-201ENST00000377575 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.22■□□□□ 0.67
HMGN4-201ENST00000377575 CPLX1O14810 134 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 FGBP02675 491 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 KCNA2P16389 499 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 GNA11P29992 359 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 SREBF1P36956 1147 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 SP4Q02446 784 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 PKN1Q16512 942 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 RASIP1Q5U651 963 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 AFAP1L1Q8TED9 768 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 PGBD1Q96JS3 809 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 ZMYND12Q9H0C1 365 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 BCAS3Q9H6U6 928 aa19.22■□□□□ 0.67
HMGN4-201ENST00000377575 NCOA5Q9HCD5 579 aaKnown RBP19.22■□□□□ 0.67
HMGN4-201ENST00000377575 CPLX2Q6PUV4 134 aaKnown RBP19.21■□□□□ 0.67
HMGN4-201ENST00000377575 REXO1Q8N1G1 1221 aaKnown RBP19.21■□□□□ 0.67
HMGN4-201ENST00000377575 BICD2Q8TD16 824 aa19.21■□□□□ 0.67
HMGN4-201ENST00000377575 MXRA8Q9BRK3 442 aa19.21■□□□□ 0.67
HMGN4-201ENST00000377575 TMEM260Q9NX78 707 aa19.21■□□□□ 0.67
HMGN4-201ENST00000377575 TMEM265A0A087WTH1 108 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 ATP9AO75110 1047 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 IQCF3P0C7M6 154 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 ACTN1P12814 892 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 RBL2Q08999 1139 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 PTK7Q13308 1070 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 CEP55Q53EZ4 464 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 OTOP2Q7RTS6 562 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 CTAGE1Q96RT6 745 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 MTMR10Q9NXD2 777 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 PKD2L1Q9P0L9 805 aa19.2■□□□□ 0.66
HMGN4-201ENST00000377575 C17orf102A2RUQ5 167 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 PARNO95453 639 aaKnown RBP19.19■□□□□ 0.66
HMGN4-201ENST00000377575 SMIM10L2AP0DMW4 78 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 SMIM10L2BP0DMW5 78 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 SELPP16109 830 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 TCF7P36402 384 aaPredicted RBP19.19■□□□□ 0.66
HMGN4-201ENST00000377575 ZNF76P36508 570 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 ARHGAP4P98171 946 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 SSRP1Q08945 709 aaKnown RBP19.19■□□□□ 0.66
HMGN4-201ENST00000377575 UTP14CQ5TAP6 766 aaKnown RBP19.19■□□□□ 0.66
HMGN4-201ENST00000377575 JAKMIP3Q5VZ66 844 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 DEFB128Q7Z7B8 93 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 SDF4Q9BRK5 362 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 JPH1Q9HDC5 661 aaPredicted RBP19.19■□□□□ 0.66
HMGN4-201ENST00000377575 SH3GLB2Q9NR46 395 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 KCNH7Q9NS40 1196 aa19.19■□□□□ 0.66
HMGN4-201ENST00000377575 PPFIA3O75145 1194 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 GNAT1P11488 350 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 DNAJB2P25686 324 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 STK3Q13188 491 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 ANKRD1Q15327 319 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 LRRC8DQ7L1W4 858 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 NIPA1Q7RTP0 329 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 TRIM50Q86XT4 487 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 SEPT1Q8WYJ6 367 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 DHX38Q92620 1227 aaKnown RBP19.18■□□□□ 0.66
HMGN4-201ENST00000377575 ATP6V0A1Q93050 837 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 SLC9A2Q9UBY0 812 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 NFASCO94856 1347 aa19.18■□□□□ 0.66
HMGN4-201ENST00000377575 TET1Q8NFU7 2136 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms