RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 SP8Q8IXZ3 490 aa27.95■■■□□ 2.06
C9orf40-201ENST00000376854 RUBCNQ92622 972 aa27.95■■■□□ 2.06
C9orf40-201ENST00000376854 MTMR8Q96EF0 704 aa27.95■■■□□ 2.06
C9orf40-201ENST00000376854 FGFBP2Q9BYJ0 223 aa27.95■■■□□ 2.06
C9orf40-201ENST00000376854 DMGDHQ9UI17 866 aaKnown RBP27.95■■■□□ 2.06
C9orf40-201ENST00000376854 SLC9C1Q4G0N8 1177 aa27.94■■■□□ 2.06
C9orf40-201ENST00000376854 HYIQ5T013 277 aa27.94■■■□□ 2.06
C9orf40-201ENST00000376854 GPATCH4Q5T3I0 446 aaKnown RBP27.94■■■□□ 2.06
C9orf40-201ENST00000376854 KCTD1Q719H9 257 aa27.94■■■□□ 2.06
C9orf40-201ENST00000376854 CEP63Q96MT8 703 aa27.94■■■□□ 2.06
C9orf40-201ENST00000376854 NUCKS1Q9H1E3 243 aaKnown RBP27.94■■■□□ 2.06
C9orf40-201ENST00000376854 SMARCAL1Q9NZC9 954 aa27.94■■■□□ 2.06
C9orf40-201ENST00000376854 E9PMD0 336 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 NOL4O94818 638 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 SCNN1DP51172 638 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 DOK7Q18PE1 504 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 FAM83BQ5T0W9 1011 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 SFMBT2Q5VUG0 894 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 KIAA1024Q9UPX6 916 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 FOCADQ5VW36 1801 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 RBAK-RBAKDNI3L0D1 243 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 AGPSO00116 658 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 BUB1O43683 1085 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 NAP1L1P55209 391 aaKnown RBP27.93■■■□□ 2.06
C9orf40-201ENST00000376854 NELFCDQ8IXH7 590 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 CCDC65Q8IXS2 484 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 RNF10Q8N5U6 811 aaKnown RBP27.93■■■□□ 2.06
C9orf40-201ENST00000376854 LSM14BQ9BX40 385 aaKnown RBP27.93■■■□□ 2.06
C9orf40-201ENST00000376854 TLR10Q9BXR5 811 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 EHD2Q9NZN4 543 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 LRRC37AA6NMS7 1700 aa27.93■■■□□ 2.06
C9orf40-201ENST00000376854 SHMT1P34896 483 aa27.92■■■□□ 2.06
C9orf40-201ENST00000376854 PAFAH1B1P43034 410 aa27.92■■■□□ 2.06
C9orf40-201ENST00000376854 SYN2Q92777 582 aaPredicted RBP27.92■■■□□ 2.06
C9orf40-201ENST00000376854 UIMC1Q96RL1 719 aa27.92■■■□□ 2.06
C9orf40-201ENST00000376854 ATP6V0A2Q9Y487 856 aa27.92■■■□□ 2.06
C9orf40-201ENST00000376854 GOLGA6BA6NDN3 693 aa27.92■■■□□ 2.06
C9orf40-201ENST00000376854 MPHOSPH10O00566 681 aaKnown RBP27.92■■■□□ 2.06
C9orf40-201ENST00000376854 SERPING1P05155 500 aa27.92■■■□□ 2.06
C9orf40-201ENST00000376854 KLHDC7AQ5VTJ3 777 aa27.92■■■□□ 2.06
C9orf40-201ENST00000376854 COA1Q9GZY4 146 aa27.92■■■□□ 2.06
C9orf40-201ENST00000376854 USP40Q9NVE5 1235 aa27.92■■■□□ 2.06
C9orf40-201ENST00000376854 ATF5Q9Y2D1 282 aaPredicted RBP27.92■■■□□ 2.06
C9orf40-201ENST00000376854 PCDHA2Q9Y5H9 948 aa27.92■■■□□ 2.06
C9orf40-201ENST00000376854 TLR2O60603 784 aa27.91■■■□□ 2.06
C9orf40-201ENST00000376854 GNA14O95837 355 aa27.91■■■□□ 2.06
C9orf40-201ENST00000376854 PLA2G4BP0C869 781 aa27.91■■■□□ 2.06
C9orf40-201ENST00000376854 MRPS25P82663 173 aaKnown RBP27.91■■■□□ 2.06
C9orf40-201ENST00000376854 SLC7A5Q01650 507 aa27.91■■■□□ 2.06
C9orf40-201ENST00000376854 SND1Q7KZF4 910 aaKnown RBP eCLIP27.91■■■□□ 2.06
C9orf40-201ENST00000376854 NAP1L4Q99733 375 aaKnown RBP27.91■■■□□ 2.06
C9orf40-201ENST00000376854 MYO3BQ8WXR4 1341 aa27.91■■■□□ 2.06
C9orf40-201ENST00000376854 POLR2FP61218 127 aaKnown RBP27.91■■■□□ 2.06
C9orf40-201ENST00000376854 LRRC31Q6UY01 552 aa27.91■■■□□ 2.06
C9orf40-201ENST00000376854 GPBP1Q86WP2 473 aa27.91■■■□□ 2.06
C9orf40-201ENST00000376854 UTP18Q9Y5J1 556 aaKnown RBP eCLIP27.91■■■□□ 2.06
C9orf40-201ENST00000376854 NPHP3-ACAD11A0A0J9YXS1 232 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 CACNB1Q02641 598 aaPredicted RBP27.9■■■□□ 2.06
C9orf40-201ENST00000376854 HERC4Q5GLZ8 1057 aaPredicted RBP27.9■■■□□ 2.06
C9orf40-201ENST00000376854 SUGT1Q9Y2Z0 365 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 ADAMTSL1Q8N6G6 1762 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 POTEB3A0JP26 581 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 POTECB2RU33 542 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 FOXR1Q6PIV2 292 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 POTEBQ6S5H4 581 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 TMC4Q7Z404 712 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 TRIM59Q8IWR1 403 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 LCMT1Q9UIC8 334 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 TSKSQ9UJT2 592 aa27.9■■■□□ 2.06
C9orf40-201ENST00000376854 USP17L15C9J2P7 530 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 USP17L13C9JLJ4 530 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 USP17L11C9JVI0 530 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 USP17L18D6R9N7 530 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 USP17L22D6RA61 530 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 USP17L17D6RBQ6 530 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 USP17L19D6RCP7 530 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 USP17L20D6RJB6 530 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 HSPA1LP34931 641 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 USP17L24Q0WX57 530 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 HAUS3Q68CZ6 603 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 USP17L6PQ6QN14 398 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 TSPYL1Q9H0U9 437 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 STIM2Q9P246 746 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 ANKRD31Q8N7Z5 1873 aa27.89■■■□□ 2.06
C9orf40-201ENST00000376854 MARSP56192 900 aaKnown RBP27.89■■■□□ 2.05
C9orf40-201ENST00000376854 SRLQ86TD4 932 aa27.89■■■□□ 2.05
C9orf40-201ENST00000376854 SCFD1Q8WVM8 642 aa27.89■■■□□ 2.05
C9orf40-201ENST00000376854 ZC3H12CQ9C0D7 883 aaKnown RBP27.89■■■□□ 2.05
C9orf40-201ENST00000376854 QTRT2Q9H974 415 aaKnown RBP27.89■■■□□ 2.05
C9orf40-201ENST00000376854 KANSL2Q9H9L4 492 aa27.89■■■□□ 2.05
C9orf40-201ENST00000376854 LUC7LQ9NQ29 371 aaKnown RBP27.89■■■□□ 2.05
C9orf40-201ENST00000376854 GOLGB1Q14789 3259 aaKnown RBP27.88■■■□□ 2.05
C9orf40-201ENST00000376854 C10orf71Q711Q0 1435 aa27.88■■■□□ 2.05
C9orf40-201ENST00000376854 APBA1Q02410 837 aa27.88■■■□□ 2.05
C9orf40-201ENST00000376854 KCTD10Q9H3F6 313 aa27.88■■■□□ 2.05
C9orf40-201ENST00000376854 CYP11B2P19099 503 aa27.87■■■□□ 2.05
C9orf40-201ENST00000376854 EMILIN3Q9NT22 766 aa27.87■■■□□ 2.05
C9orf40-201ENST00000376854 RBM12Q9NTZ6 932 aaKnown RBP27.87■■■□□ 2.05
C9orf40-201ENST00000376854 FEZ2Q9UHY8 353 aaPredicted RBP27.87■■■□□ 2.05
C9orf40-201ENST00000376854 RRP15Q9Y3B9 282 aaKnown RBP27.87■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms