RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 NCK2O43639 380 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 SMIM10L2AP0DMW4 78 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 SMIM10L2BP0DMW5 78 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 CTNNB1P35222 781 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 HTRA4P83105 476 aaPredicted RBP16.36■□□□□ 0.21
PTCH1-202ENST00000375271 MBTPS1Q14703 1052 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 PLEKHG4Q58EX7 1191 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 TMEM192Q8IY95 271 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 USP26Q9BXU7 913 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 CD320Q9NPF0 282 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 CLDND1Q9NY35 253 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 ZSWIM5Q9P217 1185 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 RWDD3Q9Y3V2 267 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 BRWD1Q9NSI6 2320 aa16.36■□□□□ 0.21
PTCH1-202ENST00000375271 GRXCR2A6NFK2 248 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 H3BNC9 293 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 LGALS2P05162 132 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 HOXD8P13378 290 aaPredicted RBP16.35■□□□□ 0.21
PTCH1-202ENST00000375271 NEDD9Q14511 834 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 TCEAL5Q5H9L2 206 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 B4GALNT3Q6L9W6 998 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 TRAF7Q6Q0C0 670 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 STOX1Q6ZVD7 989 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 VSIG10LQ86VR7 867 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 FIBCD1Q8N539 461 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 SP7Q8TDD2 431 aaPredicted RBP16.35■□□□□ 0.21
PTCH1-202ENST00000375271 PABPC5Q96DU9 382 aaKnown RBP16.35■□□□□ 0.21
PTCH1-202ENST00000375271 POP1Q99575 1024 aaKnown RBP16.35■□□□□ 0.21
PTCH1-202ENST00000375271 DSCC1Q9BVC3 393 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 C11orf16Q9NQ32 467 aa16.35■□□□□ 0.21
PTCH1-202ENST00000375271 TREHO43280 583 aa16.34■□□□□ 0.21
PTCH1-202ENST00000375271 STAM2O75886 525 aa16.34■□□□□ 0.21
PTCH1-202ENST00000375271 ARHGAP4P98171 946 aa16.34■□□□□ 0.21
PTCH1-202ENST00000375271 SART3Q15020 963 aaKnown RBP16.34■□□□□ 0.21
PTCH1-202ENST00000375271 RSPH3Q86UC2 560 aa16.34■□□□□ 0.21
PTCH1-202ENST00000375271 ALYREFQ86V81 257 aaKnown RBP16.34■□□□□ 0.21
PTCH1-202ENST00000375271 CUL5Q93034 780 aa16.34■□□□□ 0.21
PTCH1-202ENST00000375271 TOP1MTQ969P6 601 aa16.34■□□□□ 0.21
PTCH1-202ENST00000375271 PPP2R3CQ969Q6 453 aa16.34■□□□□ 0.21
PTCH1-202ENST00000375271 IL17RAQ96F46 866 aa16.34■□□□□ 0.21
PTCH1-202ENST00000375271 C16orf70Q9BSU1 422 aa16.34■□□□□ 0.21
PTCH1-202ENST00000375271 C11orf84Q9BUA3 381 aaPredicted RBP16.34■□□□□ 0.21
PTCH1-202ENST00000375271 RWDD1Q9H446 243 aaPredicted RBP16.34■□□□□ 0.21
PTCH1-202ENST00000375271 PRKAG3Q9UGI9 489 aa16.34■□□□□ 0.21
PTCH1-202ENST00000375271 SP4Q02446 784 aa16.33■□□□□ 0.2
PTCH1-202ENST00000375271 UTP14CQ5TAP6 766 aaKnown RBP16.33■□□□□ 0.2
PTCH1-202ENST00000375271 STAG2Q8N3U4 1231 aa16.33■□□□□ 0.2
PTCH1-202ENST00000375271 NEK9Q8TD19 979 aa16.33■□□□□ 0.2
PTCH1-202ENST00000375271 ZFP91Q96JP5 570 aaPredicted RBP16.33■□□□□ 0.2
PTCH1-202ENST00000375271 RNPEPQ9H4A4 650 aa16.33■□□□□ 0.2
PTCH1-202ENST00000375271 NLRC5Q86WI3 1866 aa16.33■□□□□ 0.2
PTCH1-202ENST00000375271 FIBPO43427 364 aa16.32■□□□□ 0.2
PTCH1-202ENST00000375271 RGS20O76081 388 aa16.32■□□□□ 0.2
PTCH1-202ENST00000375271 GHRHRQ02643 423 aa16.32■□□□□ 0.2
PTCH1-202ENST00000375271 METTL7BQ6UX53 244 aa16.32■□□□□ 0.2
PTCH1-202ENST00000375271 CYFIP1Q7L576 1253 aa16.32■□□□□ 0.2
PTCH1-202ENST00000375271 RALYLQ86SE5 291 aaKnown RBP16.32■□□□□ 0.2
PTCH1-202ENST00000375271 IL31RAQ8NI17 732 aa16.32■□□□□ 0.2
PTCH1-202ENST00000375271 SETD4Q9NVD3 440 aa16.32■□□□□ 0.2
PTCH1-202ENST00000375271 RALGAPA2Q2PPJ7 1873 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 OPLAHO14841 1288 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 IFIT3O14879 490 aaKnown RBP16.31■□□□□ 0.2
PTCH1-202ENST00000375271 CSPG5O95196 566 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 SP2Q02086 613 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 HIC1Q14526 733 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 RPAINQ86UA6 219 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 ADHFE1Q8IWW8 467 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 SMARCC2Q8TAQ2 1214 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 PIGSQ96S52 555 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 LMAN2LQ9H0V9 348 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 MAD2L2Q9UI95 211 aa16.31■□□□□ 0.2
PTCH1-202ENST00000375271 PNMA6FA0A0J9YX94 578 aa16.3■□□□□ 0.2
PTCH1-202ENST00000375271 RB1P06400 928 aa16.3■□□□□ 0.2
PTCH1-202ENST00000375271 AAMPQ13685 434 aa16.3■□□□□ 0.2
PTCH1-202ENST00000375271 CLUL1Q15846 466 aa16.3■□□□□ 0.2
PTCH1-202ENST00000375271 TAF2Q6P1X5 1199 aa16.3■□□□□ 0.2
PTCH1-202ENST00000375271 NLRX1Q86UT6 975 aa16.3■□□□□ 0.2
PTCH1-202ENST00000375271 CHD1LQ86WJ1 897 aa16.3■□□□□ 0.2
PTCH1-202ENST00000375271 GIMAP8Q8ND71 665 aaPredicted RBP16.3■□□□□ 0.2
PTCH1-202ENST00000375271 PIBF1Q8WXW3 757 aa16.3■□□□□ 0.2
PTCH1-202ENST00000375271 GPKOWQ92917 476 aaPredicted RBP eCLIP16.3■□□□□ 0.2
PTCH1-202ENST00000375271 KCNH6Q9H252 994 aa16.3■□□□□ 0.2
PTCH1-202ENST00000375271 RTEL1Q9NZ71 1219 aa16.3■□□□□ 0.2
PTCH1-202ENST00000375271 MUC6Q6W4X9 2439 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 ADGRA3Q8IWK6 1321 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 NRCAMQ92823 1304 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 PALM3A6NDB9 673 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-202ENST00000375271 PPP1R11O60927 126 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-202ENST00000375271 GHRP10912 638 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 ZP2Q05996 745 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 BTG3Q14201 252 aaPredicted RBP16.29■□□□□ 0.2
PTCH1-202ENST00000375271 GRM4Q14833 912 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 WTAPQ15007 396 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 CATIPQ7Z7H3 387 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 TRIM50Q86XT4 487 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 LMBR1Q8WVP7 490 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 MTMR8Q96EF0 704 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 MFSD14AQ96MC6 490 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 GPR20Q99678 358 aa16.29■□□□□ 0.2
PTCH1-202ENST00000375271 IGFLR1Q9H665 355 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms