RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 USP17L6PQ6QN14 398 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 DPP9Q86TI2 863 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 NPLOC4Q8TAT6 608 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 BARHL2Q9NY43 387 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 CYP39A1Q9NYL5 469 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 DACH1Q9UI36 760 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 PCDHA4Q9UN74 947 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 MRPL11Q9Y3B7 192 aaKnown RBP16.01■□□□□ 0.15
HMGA1-203ENST00000374116 ACTN4O43707 911 aaKnown RBP16.01■□□□□ 0.15
HMGA1-203ENST00000374116 SKILP12757 684 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 ATP2C1P98194 919 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-203ENST00000374116 GRB14Q14449 540 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 TTC38Q5R3I4 469 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 RNF207Q6ZRF8 634 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 BLIDQ8IZY5 108 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 MLKLQ8NB16 471 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 CCDC150Q8NCX0 1101 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 SMARCE1Q969G3 411 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 C16orf45Q96MC5 204 aaPredicted RBP16.01■□□□□ 0.15
HMGA1-203ENST00000374116 NUDT12Q9BQG2 462 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 HSD3B7Q9H2F3 369 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 COL20A1Q9P218 1284 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 SRRDQ9UH36 339 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 MAN1B1Q9UKM7 699 aa16.01■□□□□ 0.15
HMGA1-203ENST00000374116 LCTP09848 1927 aa16■□□□□ 0.15
HMGA1-203ENST00000374116 ELNP15502 786 aa16■□□□□ 0.15
HMGA1-203ENST00000374116 TKFCQ3LXA3 575 aa16■□□□□ 0.15
HMGA1-203ENST00000374116 FCHSD1Q86WN1 690 aa16■□□□□ 0.15
HMGA1-203ENST00000374116 FLRT1Q9NZU1 646 aa16■□□□□ 0.15
HMGA1-203ENST00000374116 FBXO40Q9UH90 709 aa16■□□□□ 0.15
HMGA1-203ENST00000374116 PTCH2Q9Y6C5 1203 aa16■□□□□ 0.15
HMGA1-203ENST00000374116 ASTN1O14525 1302 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 SMCO2A6NFE2 343 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 SLC15A5A6NIM6 579 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 STRNO43815 780 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 MYCP01106 439 aaPredicted RBP15.99■□□□□ 0.15
HMGA1-203ENST00000374116 CCZ1BP86790 482 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 CCZ1P86791 482 aaPredicted RBP15.99■□□□□ 0.15
HMGA1-203ENST00000374116 MAP2K5Q13163 448 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 MORC3Q14149 939 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 ARID5BQ14865 1188 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 PIK3AP1Q6ZUJ8 805 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 NYAP1Q6ZVC0 841 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 USP49Q70CQ1 688 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 PLXNA1Q9UIW2 1896 aa15.99■□□□□ 0.15
HMGA1-203ENST00000374116 BMP6P22004 513 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 COPB2P35606 906 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 UBXN2AP68543 259 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 TRIM32Q13049 653 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 ZNF174Q15697 407 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 CT47A1Q5JQC4 288 aaPredicted RBP15.98■□□□□ 0.15
HMGA1-203ENST00000374116 CEP135Q66GS9 1140 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 TMC6Q7Z403 805 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 C4orf32Q8N8J7 132 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 SPATA20Q8TB22 786 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 RAET1EQ8TD07 263 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 RASGRP4Q8TDF6 673 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 USP6NLQ92738 828 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 ZFP91Q96JP5 570 aaPredicted RBP15.98■□□□□ 0.15
HMGA1-203ENST00000374116 TAAR1Q96RJ0 339 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 ZMYND12Q9H0C1 365 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 PSTPIP2Q9H939 334 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 TMEM260Q9NX78 707 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 SOWAHBA6NEL2 793 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 KIF2AO00139 706 aaPredicted RBP15.98■□□□□ 0.15
HMGA1-203ENST00000374116 MEIS2O14770 477 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 PTGDRQ13258 359 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 TPD52L1Q16890 204 aaPredicted RBP15.98■□□□□ 0.15
HMGA1-203ENST00000374116 PDILTQ8N807 584 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 CCDC148Q8NFR7 591 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 SYTL5Q8TDW5 730 aaPredicted RBP15.98■□□□□ 0.15
HMGA1-203ENST00000374116 FGD4Q96M96 766 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 BIN2Q9UBW5 565 aaPredicted RBP15.98■□□□□ 0.15
HMGA1-203ENST00000374116 PCDHA6Q9UN73 950 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 PCDHA8Q9Y5H6 950 aa15.98■□□□□ 0.15
HMGA1-203ENST00000374116 MCM3APO60318 1980 aa15.97■□□□□ 0.15
HMGA1-203ENST00000374116 RBBP6Q7Z6E9 1792 aaKnown RBP15.97■□□□□ 0.15
HMGA1-203ENST00000374116 DNAJC25-GNG10A0A024R161 153 aa15.97■□□□□ 0.15
HMGA1-203ENST00000374116 POTEB2H3BUK9 544 aa15.97■□□□□ 0.15
HMGA1-203ENST00000374116 SERPINC1P01008 464 aa15.97■□□□□ 0.15
HMGA1-203ENST00000374116 PRR29P0C7W0 189 aa15.97■□□□□ 0.15
HMGA1-203ENST00000374116 HOXD10P28358 340 aa15.97■□□□□ 0.15
HMGA1-203ENST00000374116 UBASH3AP57075 661 aa15.97■□□□□ 0.15
HMGA1-203ENST00000374116 CTU1Q7Z7A3 348 aaKnown RBP15.97■□□□□ 0.15
HMGA1-203ENST00000374116 SH3TC2Q8TF17 1288 aa15.97■□□□□ 0.15
HMGA1-203ENST00000374116 TRIB2Q92519 343 aa15.97■□□□□ 0.15
HMGA1-203ENST00000374116 PYM1Q9BRP8 204 aaKnown RBP15.97■□□□□ 0.15
HMGA1-203ENST00000374116 PTPN22Q9Y2R2 807 aa15.97■□□□□ 0.15
HMGA1-203ENST00000374116 A0A087X0B3 334 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 GCOM1H8Y6P7 765 aaPredicted RBP15.96■□□□□ 0.15
HMGA1-203ENST00000374116 NRDCO43847 1150 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 POLR2MP0CAP2 368 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 ATP1A3P13637 1013 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 H2AFXP16104 143 aaPredicted RBP15.96■□□□□ 0.15
HMGA1-203ENST00000374116 RGS2P41220 211 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 ADCY7P51828 1080 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 BMS1Q14692 1282 aaKnown RBP15.96■□□□□ 0.15
HMGA1-203ENST00000374116 IL17AQ16552 155 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 ZNF792Q3KQV3 632 aa15.96■□□□□ 0.15
HMGA1-203ENST00000374116 ARL6IP4Q66PJ3 421 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms