RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 CLCN1P35523 988 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 B4GALNT4Q76KP1 1039 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 ELMOD1Q8N336 334 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 CASQ2O14958 399 aaPredicted RBP16.9■□□□□ 0.3
PTPRF-201ENST00000359947 R3HDM1Q15032 1099 aaKnown RBP16.9■□□□□ 0.3
PTPRF-201ENST00000359947 TTC31Q49AM3 519 aaPredicted RBP16.9■□□□□ 0.3
PTPRF-201ENST00000359947 ELMSAN1Q6PJG2 1045 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 LRRC43Q8N309 656 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 PARVGQ9HBI0 331 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 RPS6KA4O75676 772 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 CHRNA5P30532 468 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 ARL4AP40617 200 aa16.9■□□□□ 0.3
PTPRF-201ENST00000359947 SLFNL1Q499Z3 407 aa16.89■□□□□ 0.3
PTPRF-201ENST00000359947 CDKL2Q92772 493 aa16.89■□□□□ 0.3
PTPRF-201ENST00000359947 RNF26Q9BY78 433 aaPredicted RBP16.89■□□□□ 0.3
PTPRF-201ENST00000359947 PNMA6FA0A0J9YX94 578 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 TROVE2P10155 538 aaKnown RBP eCLIP16.89■□□□□ 0.29
PTPRF-201ENST00000359947 SLC27A3Q5K4L6 730 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 HSPH1Q92598 858 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 CABS1Q96KC9 395 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 POLD4Q9HCU8 107 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 HYOU1Q9Y4L1 999 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 WDR64B1ANS9 1081 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 COPB1P53618 953 aaKnown RBP16.89■□□□□ 0.29
PTPRF-201ENST00000359947 PKP1Q13835 747 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 DARS2Q6PI48 645 aaKnown RBP16.89■□□□□ 0.29
PTPRF-201ENST00000359947 MTMR6Q9Y217 621 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 ABCB11O95342 1321 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 USP17L5A8MUK1 530 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 SPP2Q13103 211 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 MTMR1Q13613 665 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 RNF219Q5W0B1 726 aaPredicted RBP16.89■□□□□ 0.29
PTPRF-201ENST00000359947 PDCD6IPQ8WUM4 868 aaKnown RBP16.89■□□□□ 0.29
PTPRF-201ENST00000359947 ARHGEF1Q92888 912 aaKnown RBP16.89■□□□□ 0.29
PTPRF-201ENST00000359947 LSG1Q9H089 658 aaKnown RBP16.89■□□□□ 0.29
PTPRF-201ENST00000359947 HOXC10Q9NYD6 342 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 DPYSL4O14531 572 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 MED7O43513 233 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 PLA2G4BP0C869 781 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 RAET1EQ8TD07 263 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 KIF1BO60333 1816 aa16.89■□□□□ 0.29
PTPRF-201ENST00000359947 A0A0G2JLW4 131 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 KRT1P04264 644 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 SPATA1Q5VX52 437 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 DNAJC24Q6P3W2 148 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 FOXP1Q9H334 677 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-201ENST00000359947 ZNF233A6NK53 670 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 FOXP4Q8IVH2 680 aaPredicted RBP16.88■□□□□ 0.29
PTPRF-201ENST00000359947 FAM133AQ8N9E0 248 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 IQCDQ96DY2 449 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 TMEM206Q9H813 350 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 TMEM63CQ9P1W3 806 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 KCNQ2O43526 872 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 KRT3P12035 628 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 TMEM179Q6ZVK1 233 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 FBXO18Q8NFZ0 1043 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 MMP19Q99542 508 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 KDM5DQ9BY66 1539 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 GNAT1P11488 350 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 PRDX5P30044 214 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 ATP1A2P50993 1020 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 VCXQ9H320 206 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 LAD1O00515 517 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 STXBP2Q15833 593 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 BAG5Q9UL15 447 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 HOXD10P28358 340 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 TTLL11Q8NHH1 800 aa16.88■□□□□ 0.29
PTPRF-201ENST00000359947 INHBAP08476 426 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 FAM71BQ8TC56 605 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 RASEFQ8IZ41 740 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 RMDN2Q96LZ7 410 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 ZWILCHQ9H900 591 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 ENC1O14682 589 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 BASP1P80723 227 aaKnown RBP16.87■□□□□ 0.29
PTPRF-201ENST00000359947 THOC5Q13769 683 aaKnown RBP16.87■□□□□ 0.29
PTPRF-201ENST00000359947 ARHGEF18Q6ZSZ5 1173 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 ARMCX2Q7L311 632 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 CROCCP2Q86T23 111 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 TEX2Q8IWB9 1127 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 SOX5P35711 763 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 THEM5Q8N1Q8 247 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.87■□□□□ 0.29
PTPRF-201ENST00000359947 PLEKHA8P1O95397 391 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 ARHGAP24Q8N264 748 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 CASP14P31944 242 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 ARHGAP4P98171 946 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 TRIP13Q15645 432 aaPredicted RBP16.87■□□□□ 0.29
PTPRF-201ENST00000359947 RHPN2Q8IUC4 686 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 ADGBQ8N7X0 1667 aa16.87■□□□□ 0.29
PTPRF-201ENST00000359947 MCF2LO15068 1137 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 PLCG1P19174 1290 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 RBM6P78332 1123 aaKnown RBP16.86■□□□□ 0.29
PTPRF-201ENST00000359947 SEPT2Q15019 361 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 MAGOHBQ96A72 148 aaKnown RBP16.86■□□□□ 0.29
PTPRF-201ENST00000359947 TYW1Q9NV66 732 aaKnown RBP16.86■□□□□ 0.29
PTPRF-201ENST00000359947 ANKARQ7Z5J8 1434 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 PRPSAP2O60256 369 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 CPP00450 1065 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 CEP120Q8N960 986 aa16.86■□□□□ 0.29
PTPRF-201ENST00000359947 CCDC51Q96ER9 411 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms