RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ANKRD13CQ8N6S4 541 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 RAD54LQ92698 747 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 GPRASP2Q96D09 838 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 GSDMAQ96QA5 445 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 MMP19Q99542 508 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 NAT10Q9H0A0 1025 aaKnown RBP20.95■□□□□ 0.94
CLN3-204ENST00000357857 PKD2L1Q9P0L9 805 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 MORF4L1Q9UBU8 362 aa20.95■□□□□ 0.94
CLN3-204ENST00000357857 ADD3Q9UEY8 706 aaKnown RBP20.95■□□□□ 0.94
CLN3-204ENST00000357857 POTEB3A0JP26 581 aa20.94■□□□□ 0.94
CLN3-204ENST00000357857 EML1O00423 815 aa20.94■□□□□ 0.94
CLN3-204ENST00000357857 MED24O75448 989 aa20.94■□□□□ 0.94
CLN3-204ENST00000357857 SLC10A3P09131 477 aa20.94■□□□□ 0.94
CLN3-204ENST00000357857 RPA1P27694 616 aa20.94■□□□□ 0.94
CLN3-204ENST00000357857 ALDH5A1P51649 535 aaPredicted RBP20.94■□□□□ 0.94
CLN3-204ENST00000357857 KCTD2Q14681 263 aa20.94■□□□□ 0.94
CLN3-204ENST00000357857 WDR78Q5VTH9 848 aa20.94■□□□□ 0.94
CLN3-204ENST00000357857 POTEBQ6S5H4 581 aa20.94■□□□□ 0.94
CLN3-204ENST00000357857 FAM133AQ8N9E0 248 aa20.94■□□□□ 0.94
CLN3-204ENST00000357857 LARP4BQ92615 738 aaKnown RBP20.94■□□□□ 0.94
CLN3-204ENST00000357857 INPP4AQ96PE3 977 aaPredicted RBP20.94■□□□□ 0.94
CLN3-204ENST00000357857 UNC45AQ9H3U1 944 aa20.94■□□□□ 0.94
CLN3-204ENST00000357857 CHMP2AO43633 222 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 AMPD3Q01432 767 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 MORC3Q14149 939 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 B3GNT9Q6UX72 402 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 SV2BQ7L1I2 683 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 KCNK18Q7Z418 384 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 CATSPER3Q86XQ3 398 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 EIF2AK1Q9BQI3 630 aaKnown RBP20.93■□□□□ 0.94
CLN3-204ENST00000357857 POLR3CQ9BUI4 534 aaPredicted RBP20.93■□□□□ 0.94
CLN3-204ENST00000357857 PORCNQ9H237 461 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 TBC1D22BQ9NU19 505 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 KIAA1024Q9UPX6 916 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 ASTN1O14525 1302 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 LRRC37A2A6NM11 1700 aa20.93■□□□□ 0.94
CLN3-204ENST00000357857 SOWAHBA6NEL2 793 aa20.92■□□□□ 0.94
CLN3-204ENST00000357857 MAFGO15525 162 aa20.92■□□□□ 0.94
CLN3-204ENST00000357857 FCER1AP12319 257 aa20.92■□□□□ 0.94
CLN3-204ENST00000357857 ITGB3BPQ13352 177 aaPredicted RBP20.92■□□□□ 0.94
CLN3-204ENST00000357857 MCM6Q14566 821 aa20.92■□□□□ 0.94
CLN3-204ENST00000357857 STXBP2Q15833 593 aa20.92■□□□□ 0.94
CLN3-204ENST00000357857 EFCC1Q9HA90 598 aa20.92■□□□□ 0.94
CLN3-204ENST00000357857 DDX39AO00148 427 aaKnown RBP20.92■□□□□ 0.94
CLN3-204ENST00000357857 DHX15O43143 795 aaKnown RBP20.92■□□□□ 0.94
CLN3-204ENST00000357857 SPATA31C1P0DKV0 1188 aa20.92■□□□□ 0.94
CLN3-204ENST00000357857 DHX8Q14562 1220 aaKnown RBP20.92■□□□□ 0.94
CLN3-204ENST00000357857 LUZP1Q86V48 1076 aa20.92■□□□□ 0.94
CLN3-204ENST00000357857 C7orf25Q9BPX7 421 aa20.92■□□□□ 0.94
CLN3-204ENST00000357857 ZCCHC17Q9NP64 241 aaKnown RBP20.92■□□□□ 0.94
CLN3-204ENST00000357857 ABT1Q9ULW3 272 aaKnown RBP20.92■□□□□ 0.94
CLN3-204ENST00000357857 PLXNA1Q9UIW2 1896 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 DNAJC25-GNG10A0A024R161 153 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 POTEFA5A3E0 1075 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 B4DLN1 442 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 RPN1P04843 607 aaKnown RBP20.91■□□□□ 0.94
CLN3-204ENST00000357857 BMP6P22004 513 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 EPHA7Q15375 998 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 GNPTABQ3T906 1256 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 POTEGQ6S5H5 508 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 CCDC102AQ96A19 550 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 CDHR1Q96JP9 859 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 BPIFA3Q9BQP9 254 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 TUFT1Q9NNX1 390 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 RMND1Q9NWS8 449 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 DOCK5Q9H7D0 1870 aa20.91■□□□□ 0.94
CLN3-204ENST00000357857 TMEM88BA6NKF7 163 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 IGF2BP3O00425 579 aaKnown RBP eCLIP20.9■□□□□ 0.94
CLN3-204ENST00000357857 EIF3JO75822 258 aaKnown RBP20.9■□□□□ 0.94
CLN3-204ENST00000357857 RGS20O76081 388 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 TOMM70O94826 608 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 PGK2P07205 417 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 EDNRBP24530 442 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 SEMA3FQ13275 785 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 IQCB1Q15051 598 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 MPHOSPH6Q99547 160 aaKnown RBP20.9■□□□□ 0.94
CLN3-204ENST00000357857 TRIM9Q9C026 710 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 LRRC27Q9C0I9 530 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 LOXHD1Q8IVV2 1947 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 FAM155AB1AL88 458 aaPredicted RBP20.9■□□□□ 0.94
CLN3-204ENST00000357857 E9PMD0 336 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 ATP9AO75110 1047 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 INHBEP58166 350 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 CYP4A11Q02928 519 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 PDE4DQ08499 809 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 FAM110CQ1W6H9 321 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 MIER3Q7Z3K6 550 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 KCTD17Q8N5Z5 321 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 MLKLQ8NB16 471 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 DYDC2Q96IM9 177 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 HSD17B14Q9BPX1 270 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 RGL1Q9NZL6 768 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 DACH1Q9UI36 760 aa20.9■□□□□ 0.94
CLN3-204ENST00000357857 WDR81Q562E7 1941 aa20.89■□□□□ 0.93
CLN3-204ENST00000357857 FSTL1Q12841 308 aa20.89■□□□□ 0.93
CLN3-204ENST00000357857 NEK9Q8TD19 979 aa20.89■□□□□ 0.93
CLN3-204ENST00000357857 TCEAL9Q9UHQ7 104 aa20.89■□□□□ 0.93
CLN3-204ENST00000357857 DNM3Q9UQ16 869 aa20.89■□□□□ 0.93
CLN3-204ENST00000357857 MCM3APO60318 1980 aa20.89■□□□□ 0.93
CLN3-204ENST00000357857 MYMKA6NI61 221 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms