RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 DHX15O43143 795 aaKnown RBP25.11■■□□□ 1.61
SHMT1-203ENST00000354098 FARP2O94887 1054 aaPredicted RBP25.11■■□□□ 1.61
SHMT1-203ENST00000354098 ZSCAN22P10073 491 aaPredicted RBP25.11■■□□□ 1.61
SHMT1-203ENST00000354098 EN2P19622 333 aaPredicted RBP25.11■■□□□ 1.61
SHMT1-203ENST00000354098 TRAPPC10P48553 1259 aa25.11■■□□□ 1.61
SHMT1-203ENST00000354098 HSDL1Q3SXM5 330 aa25.11■■□□□ 1.61
SHMT1-203ENST00000354098 ETNPPLQ8TBG4 499 aa25.11■■□□□ 1.61
SHMT1-203ENST00000354098 PCDHB6Q9Y5E3 794 aa25.11■■□□□ 1.61
SHMT1-203ENST00000354098 SP4Q02446 784 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 LAMC2Q13753 1193 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 METTL7BQ6UX53 244 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 KLHDC9Q8NEP7 349 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 AFG1LQ8WV93 481 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 EMID1Q96A84 441 aaPredicted RBP25.1■■□□□ 1.61
SHMT1-203ENST00000354098 SPC25Q9HBM1 224 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 DAXXQ9UER7 740 aaPredicted RBP25.1■■□□□ 1.61
SHMT1-203ENST00000354098 DOCK5Q9H7D0 1870 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 DDX39AO00148 427 aaKnown RBP25.1■■□□□ 1.61
SHMT1-203ENST00000354098 PDIA4P13667 645 aaKnown RBP25.1■■□□□ 1.61
SHMT1-203ENST00000354098 SOX10P56693 466 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 NKX3-2P78367 333 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 FSCN1Q16658 493 aaKnown RBP25.1■■□□□ 1.61
SHMT1-203ENST00000354098 RILPL1Q5EBL4 403 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 GNASQ5JWF2 1037 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 GIMAP8Q8ND71 665 aaPredicted RBP25.1■■□□□ 1.61
SHMT1-203ENST00000354098 HAS1Q92839 578 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 SLC5A5Q92911 643 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 SPATA33Q96N06 139 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 KCNMB3Q9NPA1 279 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 ZDHHC9Q9Y397 364 aa25.1■■□□□ 1.61
SHMT1-203ENST00000354098 KIAA0100Q14667 2235 aaKnown RBP25.09■■□□□ 1.61
SHMT1-203ENST00000354098 MNX1P50219 401 aaPredicted RBP25.09■■□□□ 1.61
SHMT1-203ENST00000354098 CCSAPQ6IQ19 270 aaPredicted RBP25.09■■□□□ 1.61
SHMT1-203ENST00000354098 RNF180Q86T96 592 aa25.09■■□□□ 1.61
SHMT1-203ENST00000354098 ARRDC4Q8NCT1 418 aa25.09■■□□□ 1.61
SHMT1-203ENST00000354098 SDF4Q9BRK5 362 aa25.09■■□□□ 1.61
SHMT1-203ENST00000354098 TMEM60Q9H2L4 133 aa25.09■■□□□ 1.61
SHMT1-203ENST00000354098 NFASCO94856 1347 aa25.09■■□□□ 1.61
SHMT1-203ENST00000354098 A6NJR5 290 aa25.08■■□□□ 1.61
SHMT1-203ENST00000354098 NEMFO60524 1076 aa25.08■■□□□ 1.61
SHMT1-203ENST00000354098 DDIT3P35638 169 aa25.08■■□□□ 1.61
SHMT1-203ENST00000354098 KCNA10Q16322 511 aa25.08■■□□□ 1.61
SHMT1-203ENST00000354098 ZSCAN16Q9H4T2 348 aaPredicted RBP25.08■■□□□ 1.61
SHMT1-203ENST00000354098 F13A1P00488 732 aa25.07■■□□□ 1.6
SHMT1-203ENST00000354098 PPTC7Q8NI37 304 aa25.07■■□□□ 1.6
SHMT1-203ENST00000354098 JPH1Q9HDC5 661 aaPredicted RBP25.07■■□□□ 1.6
SHMT1-203ENST00000354098 TBC1D22BQ9NU19 505 aa25.07■■□□□ 1.6
SHMT1-203ENST00000354098 SLC9A2Q9UBY0 812 aa25.07■■□□□ 1.6
SHMT1-203ENST00000354098 BRD1O95696 1058 aa25.07■■□□□ 1.6
SHMT1-203ENST00000354098 MMP3P08254 477 aa25.07■■□□□ 1.6
SHMT1-203ENST00000354098 CST5P28325 142 aaPredicted RBP25.07■■□□□ 1.6
SHMT1-203ENST00000354098 EIF4ENIF1Q9NRA8 985 aaKnown RBP25.07■■□□□ 1.6
SHMT1-203ENST00000354098 PSMD10O75832 226 aa25.06■■□□□ 1.6
SHMT1-203ENST00000354098 CCNE2O96020 404 aa25.06■■□□□ 1.6
SHMT1-203ENST00000354098 CPT1AP50416 773 aa25.06■■□□□ 1.6
SHMT1-203ENST00000354098 CALCRLQ16602 461 aa25.06■■□□□ 1.6
SHMT1-203ENST00000354098 LRCH2Q5VUJ6 765 aa25.06■■□□□ 1.6
SHMT1-203ENST00000354098 C4orf32Q8N8J7 132 aa25.06■■□□□ 1.6
SHMT1-203ENST00000354098 DIS3LQ8TF46 1054 aaKnown RBP25.06■■□□□ 1.6
SHMT1-203ENST00000354098 MTMR9Q96QG7 549 aa25.06■■□□□ 1.6
SHMT1-203ENST00000354098 RIT2Q99578 217 aa25.06■■□□□ 1.6
SHMT1-203ENST00000354098 GPR20Q99678 358 aa25.06■■□□□ 1.6
SHMT1-203ENST00000354098 DNM1LO00429 736 aa25.05■■□□□ 1.6
SHMT1-203ENST00000354098 TBX3O15119 743 aa25.05■■□□□ 1.6
SHMT1-203ENST00000354098 GAS7O60861 476 aa25.05■■□□□ 1.6
SHMT1-203ENST00000354098 ASGR1P07306 291 aa25.05■■□□□ 1.6
SHMT1-203ENST00000354098 FAM20AQ96MK3 541 aa25.05■■□□□ 1.6
SHMT1-203ENST00000354098 FTOQ9C0B1 505 aaKnown RBP eCLIP25.05■■□□□ 1.6
SHMT1-203ENST00000354098 NOP56O00567 594 aaKnown RBP25.04■■□□□ 1.6
SHMT1-203ENST00000354098 MARCH6O60337 910 aa25.04■■□□□ 1.6
SHMT1-203ENST00000354098 ORC2Q13416 577 aaPredicted RBP25.04■■□□□ 1.6
SHMT1-203ENST00000354098 FOXD4L6Q3SYB3 417 aaPredicted RBP25.04■■□□□ 1.6
SHMT1-203ENST00000354098 FOXD4L3Q6VB84 417 aaPredicted RBP25.04■■□□□ 1.6
SHMT1-203ENST00000354098 GSTTP1A0A1W2PQM5 241 aa25.04■■□□□ 1.6
SHMT1-203ENST00000354098 KBTBD13C9JR72 458 aa25.04■■□□□ 1.6
SHMT1-203ENST00000354098 MYL3P08590 195 aa25.04■■□□□ 1.6
SHMT1-203ENST00000354098 ACLYP53396 1101 aa25.04■■□□□ 1.6
SHMT1-203ENST00000354098 ACTR2P61160 394 aa25.04■■□□□ 1.6
SHMT1-203ENST00000354098 PTGDRQ13258 359 aa25.04■■□□□ 1.6
SHMT1-203ENST00000354098 CXCL17Q6UXB2 119 aa25.04■■□□□ 1.6
SHMT1-203ENST00000354098 PCSK9Q8NBP7 692 aaKnown RBP25.04■■□□□ 1.6
SHMT1-203ENST00000354098 TEKT3Q9BXF9 490 aa25.04■■□□□ 1.6
SHMT1-203ENST00000354098 UNC45AQ9H3U1 944 aa25.04■■□□□ 1.6
SHMT1-203ENST00000354098 BAG4O95429 457 aaKnown RBP25.03■■□□□ 1.6
SHMT1-203ENST00000354098 TXKP42681 527 aa25.03■■□□□ 1.6
SHMT1-203ENST00000354098 DGKDQ16760 1214 aa25.03■■□□□ 1.6
SHMT1-203ENST00000354098 BRDTQ58F21 947 aaPredicted RBP25.03■■□□□ 1.6
SHMT1-203ENST00000354098 ANKLE1Q8NAG6 615 aa25.03■■□□□ 1.6
SHMT1-203ENST00000354098 FERMT2Q96AC1 680 aa25.03■■□□□ 1.6
SHMT1-203ENST00000354098 TSEN34Q9BSV6 310 aaKnown RBP25.03■■□□□ 1.6
SHMT1-203ENST00000354098 CHMP2AO43633 222 aa25.02■■□□□ 1.6
SHMT1-203ENST00000354098 PPFIA4O75335 1185 aa25.02■■□□□ 1.6
SHMT1-203ENST00000354098 HOXD8P13378 290 aaPredicted RBP25.02■■□□□ 1.6
SHMT1-203ENST00000354098 TCF7P36402 384 aaPredicted RBP25.02■■□□□ 1.6
SHMT1-203ENST00000354098 SLFN12Q8IYM2 578 aa25.02■■□□□ 1.6
SHMT1-203ENST00000354098 SEPT1Q8WYJ6 367 aa25.02■■□□□ 1.6
SHMT1-203ENST00000354098 PAWRQ96IZ0 340 aaKnown RBP25.02■■□□□ 1.6
SHMT1-203ENST00000354098 VAV3Q9UKW4 847 aa25.02■■□□□ 1.6
SHMT1-203ENST00000354098 PHF24Q9UPV7 400 aa25.02■■□□□ 1.6
SHMT1-203ENST00000354098 CLIC4Q9Y696 253 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms