RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ZNF646O15015 1829 aaPredicted RBP17.51■□□□□ 0.39
HMGA1-202ENST00000347617 MYH10P35580 1976 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 LAD1O00515 517 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 PDCLQ13371 301 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 NPY5RQ15761 445 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 PTGISQ16647 500 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 NAA35Q5VZE5 725 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 CSGALNACT2Q8N6G5 542 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 TSEN2Q8NCE0 465 aaKnown RBP17.51■□□□□ 0.39
HMGA1-202ENST00000347617 ZNF473Q8WTR7 871 aaKnown RBP17.51■□□□□ 0.39
HMGA1-202ENST00000347617 P2RX5Q93086 422 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 LZTS2Q9BRK4 669 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 CCSER1Q9C0I3 900 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 DHX36Q9H2U1 1008 aaKnown RBP17.51■□□□□ 0.39
HMGA1-202ENST00000347617 LRWD1Q9UFC0 647 aa17.51■□□□□ 0.39
HMGA1-202ENST00000347617 V9GY48 417 aaPredicted RBP17.51■□□□□ 0.39
HMGA1-202ENST00000347617 PLIN4Q96Q06 1357 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 B4DLN1 442 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 PPIP5K2O43314 1243 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 FAM107AO95990 144 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 NR1D1P20393 614 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 POLD1P28340 1107 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 SKIDA1Q1XH10 827 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 ARMC9Q7Z3E5 817 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 CMTR1Q8N1G2 835 aaKnown RBP17.5■□□□□ 0.39
HMGA1-202ENST00000347617 PCMTD1Q96MG8 357 aaPredicted RBP17.5■□□□□ 0.39
HMGA1-202ENST00000347617 SH3GLB2Q9NR46 395 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 KCNQ5Q9NR82 932 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 SAMM50Q9Y512 469 aa17.5■□□□□ 0.39
HMGA1-202ENST00000347617 F8W031 263 aaPredicted RBP17.49■□□□□ 0.39
HMGA1-202ENST00000347617 KLRC4O43908 158 aa17.49■□□□□ 0.39
HMGA1-202ENST00000347617 NMT2O60551 498 aa17.49■□□□□ 0.39
HMGA1-202ENST00000347617 FGFR1OPO95684 399 aaKnown RBP17.49■□□□□ 0.39
HMGA1-202ENST00000347617 SMARCA1P28370 1054 aa17.49■□□□□ 0.39
HMGA1-202ENST00000347617 MDH1P40925 334 aaKnown RBP17.49■□□□□ 0.39
HMGA1-202ENST00000347617 MTIF2P46199 727 aaKnown RBP17.49■□□□□ 0.39
HMGA1-202ENST00000347617 CDR1P51861 262 aa17.49■□□□□ 0.39
HMGA1-202ENST00000347617 PREPLQ4J6C6 727 aaPredicted RBP17.49■□□□□ 0.39
HMGA1-202ENST00000347617 CCDC84Q86UT8 332 aaPredicted RBP17.49■□□□□ 0.39
HMGA1-202ENST00000347617 PNMA1Q8ND90 353 aa17.49■□□□□ 0.39
HMGA1-202ENST00000347617 ATP6V1G3Q96LB4 118 aa17.49■□□□□ 0.39
HMGA1-202ENST00000347617 MXD3Q9BW11 206 aa17.49■□□□□ 0.39
HMGA1-202ENST00000347617 AGPAT5Q9NUQ2 364 aa17.49■□□□□ 0.39
HMGA1-202ENST00000347617 PIM2Q9P1W9 311 aa17.49■□□□□ 0.39
HMGA1-202ENST00000347617 CNTNAP5Q8WYK1 1306 aa17.49■□□□□ 0.39
HMGA1-202ENST00000347617 PSME4Q14997 1843 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 TRIM49BA6NDI0 452 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 SCNN1DP51172 638 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 NLRP5P59047 1200 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 GRM4Q14833 912 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 NLRP14Q86W24 1093 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 CNOT6LQ96LI5 555 aaKnown RBP17.48■□□□□ 0.39
HMGA1-202ENST00000347617 NOX5Q96PH1 765 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 NOC4LQ9BVI4 516 aaKnown RBP17.48■□□□□ 0.39
HMGA1-202ENST00000347617 NUCKS1Q9H1E3 243 aaKnown RBP17.48■□□□□ 0.39
HMGA1-202ENST00000347617 KLC4Q9NSK0 619 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 KBTBD4Q9NVX7 518 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 ZNF219Q9P2Y4 722 aaPredicted RBP17.48■□□□□ 0.39
HMGA1-202ENST00000347617 SCN9AQ15858 1988 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 GOLGA6L10A6NI86 522 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 RASSF10A6NK89 507 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 COBLO75128 1261 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 HLA-DOAP06340 250 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 VIL1P09327 827 aaKnown RBP17.48■□□□□ 0.39
HMGA1-202ENST00000347617 SCG2P13521 617 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 PRPHP41219 470 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 KIF11P52732 1056 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 IFFO1Q0D2I5 559 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 CCDC40Q4G0X9 1142 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 C4orf32Q8N8J7 132 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 DUSP9Q99956 384 aaKnown RBP17.48■□□□□ 0.39
HMGA1-202ENST00000347617 DDX4Q9NQI0 724 aaKnown RBP17.48■□□□□ 0.39
HMGA1-202ENST00000347617 SERPINB13Q9UIV8 391 aa17.48■□□□□ 0.39
HMGA1-202ENST00000347617 SSU72P8A0A1W2PR75 194 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 CES2O00748 559 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 RASSF9O75901 435 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 IL17AQ16552 155 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 WLSQ5T9L3 541 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 FOXR2Q6PJQ5 311 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 DTHD1Q6ZMT9 781 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 KIAA0825Q8IV33 1275 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 MYCBPAPQ8TBZ2 947 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 HDAC7Q8WUI4 952 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 CCDC17Q96LX7 622 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 AK8Q96MA6 479 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 CCDC43Q96MW1 224 aaKnown RBP17.47■□□□□ 0.39
HMGA1-202ENST00000347617 CAPN6Q9Y6Q1 641 aa17.47■□□□□ 0.39
HMGA1-202ENST00000347617 YDJCA8MPS7 323 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 WNT7AO00755 349 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 MCM7P33993 719 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 MAGEA1P43355 309 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 PFKFB3Q16875 520 aaPredicted RBP17.46■□□□□ 0.39
HMGA1-202ENST00000347617 GALNT17Q6IS24 598 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 C6orf89Q6UWU4 347 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 PIK3AP1Q6ZUJ8 805 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 CCDC121Q6ZUS5 278 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 SRBD1Q8N5C6 995 aaKnown RBP17.46■□□□□ 0.39
HMGA1-202ENST00000347617 SLC44A5Q8NCS7 719 aa17.46■□□□□ 0.39
HMGA1-202ENST00000347617 RNPC3Q96LT9 517 aaKnown RBP17.46■□□□□ 0.39
HMGA1-202ENST00000347617 CCT8L2Q96SF2 557 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms