RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 TAB2Q9NYJ8 693 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 PABPC4Q13310 644 aaKnown RBP eCLIP18.94■□□□□ 0.62
SMAD4-201ENST00000342988 FAM160B1Q5W0V3 765 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 RTL3Q8N8U3 475 aaKnown RBP18.94■□□□□ 0.62
SMAD4-201ENST00000342988 ARHGAP45Q92619 1136 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 MYO1EQ12965 1108 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 RTCBQ9Y3I0 505 aaKnown RBP18.94■□□□□ 0.62
SMAD4-201ENST00000342988 EIF6P56537 245 aaKnown RBP18.94■□□□□ 0.62
SMAD4-201ENST00000342988 SPARCL1Q14515 664 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 POTEEQ6S8J3 1075 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 PRKAG2Q9UGJ0 569 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 ECM2O94769 699 aaPredicted RBP18.94■□□□□ 0.62
SMAD4-201ENST00000342988 KIAA1841Q6NSI8 718 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 DARS2Q6PI48 645 aaKnown RBP18.94■□□□□ 0.62
SMAD4-201ENST00000342988 CENPUQ71F23 418 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 AGBL1Q96MI9 1066 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 MRGBPQ9NV56 204 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 PANK4Q9NVE7 773 aa18.94■□□□□ 0.62
SMAD4-201ENST00000342988 KPNA7A9QM74 516 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 FAM47CQ5HY64 1035 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 C1orf146Q5VVC0 180 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 PLS3P13797 630 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 HABP4Q5JVS0 413 aaKnown RBP18.93■□□□□ 0.62
SMAD4-201ENST00000342988 USE1Q9NZ43 259 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 MFAP3P55082 362 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 USHBP1Q8N6Y0 703 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 RNF139Q8WU17 664 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 STAMBPL1Q96FJ0 436 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 PBKQ96KB5 322 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 DEPDC7Q96QD5 511 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 FAM83GA6ND36 823 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 ECEL1O95672 775 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 LONRF3Q496Y0 759 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 TRIM63Q969Q1 353 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 TUBGCP2Q9BSJ2 902 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 PDCD10Q9BUL8 212 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 TNNQ9UQP3 1299 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 C16orf96A6NNT2 1141 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 SKAP1Q86WV1 359 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 EFHBQ8N7U6 833 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 FSD1LQ9BXM9 530 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 RUBCNLQ9H714 662 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 AS3MTQ9HBK9 375 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 SYBUQ9NX95 663 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 PCDHGB4Q9UN71 923 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 CUL1Q13616 776 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 FBXO18Q8NFZ0 1043 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 ZNF189O75820 626 aaPredicted RBP18.93■□□□□ 0.62
SMAD4-201ENST00000342988 RPS6KB1P23443 525 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 VCPP55072 806 aaKnown RBP18.93■□□□□ 0.62
SMAD4-201ENST00000342988 TNIP2Q8NFZ5 429 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 TTC8Q8TAM2 541 aa18.93■□□□□ 0.62
SMAD4-201ENST00000342988 SYNJ2BP-COX16A0A087WUM0 186 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 H7C0S8 307 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 ASAP2O43150 1006 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 DLATP10515 647 aaKnown RBP18.92■□□□□ 0.62
SMAD4-201ENST00000342988 CARD9Q9H257 536 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 DPH5Q9H2P9 285 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 PDE11AQ9HCR9 933 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 COX16Q9P0S2 106 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 SENP1Q9P0U3 644 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 RECQLP46063 649 aaPredicted RBP18.92■□□□□ 0.62
SMAD4-201ENST00000342988 LRRC8EQ6NSJ5 796 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 GPBP1Q86WP2 473 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 LRRC49Q8IUZ0 686 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 SYT2Q8N9I0 419 aaPredicted RBP18.92■□□□□ 0.62
SMAD4-201ENST00000342988 L3MBTL3Q96JM7 780 aaPredicted RBP18.92■□□□□ 0.62
SMAD4-201ENST00000342988 ATP8A1Q9Y2Q0 1164 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 PDE6BP35913 854 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 LVRNQ6Q4G3 990 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 NHEJ1Q9H9Q4 299 aaPredicted RBP18.92■□□□□ 0.62
SMAD4-201ENST00000342988 RNF14Q9UBS8 474 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 MAPK4P31152 587 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 HAUS4Q9H6D7 363 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 H7C1D1 291 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 TRIM54Q9BYV2 358 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 LSG1Q9H089 658 aaKnown RBP18.92■□□□□ 0.62
SMAD4-201ENST00000342988 SOX13Q9UN79 622 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 DHX9Q08211 1270 aaKnown RBP18.92■□□□□ 0.62
SMAD4-201ENST00000342988 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.92■□□□□ 0.62
SMAD4-201ENST00000342988 MLXIPQ9HAP2 919 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 WDR7Q9Y4E6 1490 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 LRRIQ3A6PVS8 624 aaPredicted RBP18.92■□□□□ 0.62
SMAD4-201ENST00000342988 PIK3R2O00459 728 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 ARHGEF25Q86VW2 580 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 NLRC4Q9NPP4 1024 aa18.92■□□□□ 0.62
SMAD4-201ENST00000342988 ATXN8OSP0DMR3 200 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 CABP7Q86V35 215 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 TSSK1BQ9BXA7 367 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 KIF1BO60333 1816 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 RALBP11234 206 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 HSPA2P54652 639 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 SMYD3Q9H7B4 428 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 KRCC1Q9NPI7 259 aaPredicted RBP18.91■□□□□ 0.62
SMAD4-201ENST00000342988 MXD4Q14582 209 aaPredicted RBP18.91■□□□□ 0.62
SMAD4-201ENST00000342988 ELMOD1Q8N336 334 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 FAM32AQ9Y421 112 aaKnown RBP18.91■□□□□ 0.62
SMAD4-201ENST00000342988 MAPRE2Q15555 327 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 PPM1KQ8N3J5 372 aa18.91■□□□□ 0.62
SMAD4-201ENST00000342988 TCP11X2Q5H9J9 407 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms