RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 IPO5O00410 1097 aaKnown RBP14.95□□□□□ -0.02
HMGB1-202ENST00000339872 ATP2A1O14983 1001 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 PGM5Q15124 567 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 GPBP1Q86WP2 473 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 PURBQ96QR8 312 aaKnown RBP14.95□□□□□ -0.02
HMGB1-202ENST00000339872 TEKT3Q9BXF9 490 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 GTPBP4Q9BZE4 634 aaKnown RBP14.95□□□□□ -0.02
HMGB1-202ENST00000339872 WDR11Q9BZH6 1224 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 PKD2L1Q9P0L9 805 aa14.95□□□□□ -0.02
HMGB1-202ENST00000339872 SPDYE5A6NIY4 337 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 MRPS9P82933 396 aaKnown RBP14.94□□□□□ -0.02
HMGB1-202ENST00000339872 ARHGEF16Q5VV41 709 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 PNMA8AQ86V59 439 aaPredicted RBP14.94□□□□□ -0.02
HMGB1-202ENST00000339872 KIAA0895Q8NCT3 520 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 POLR3CQ9BUI4 534 aaPredicted RBP14.94□□□□□ -0.02
HMGB1-202ENST00000339872 SLC39A2Q9NP94 309 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 PXMP2Q9NR77 195 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 KCNH7Q9NS40 1196 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 BMP2KQ9NSY1 1161 aaPredicted RBP14.94□□□□□ -0.02
HMGB1-202ENST00000339872 CLEC11AQ9Y240 323 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 A0A0G2JLL6 359 aaPredicted RBP14.94□□□□□ -0.02
HMGB1-202ENST00000339872 BCRP11274 1271 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 MYCLP12524 364 aaPredicted RBP14.94□□□□□ -0.02
HMGB1-202ENST00000339872 PSMC6P62333 389 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 LRMPQ12912 555 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 TKFCQ3LXA3 575 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 NIPA1Q7RTP0 329 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 PRRT2Q7Z6L0 340 aaPredicted RBP14.94□□□□□ -0.02
HMGB1-202ENST00000339872 DNAJC19Q96DA6 116 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 UNC45AQ9H3U1 944 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 ACAD9Q9H845 621 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 INTS13Q9NVM9 706 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 RGL1Q9NZL6 768 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 IMPACTQ9P2X3 320 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 DNM3Q9UQ16 869 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 UBIAD1Q9Y5Z9 338 aa14.94□□□□□ -0.02
HMGB1-202ENST00000339872 DDX39AO00148 427 aaKnown RBP14.93□□□□□ -0.02
HMGB1-202ENST00000339872 CLCN1P35523 988 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 PMS1P54277 932 aaKnown RBP14.93□□□□□ -0.02
HMGB1-202ENST00000339872 SLC12A3P55017 1021 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 PABPC4Q13310 644 aaKnown RBP eCLIP14.93□□□□□ -0.024e-8■■□□□ 13.7
HMGB1-202ENST00000339872 MTMR1Q13613 665 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 ARID5BQ14865 1188 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 PTPN21Q16825 1174 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 ARMC9Q7Z3E5 817 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 PROCA1Q8NCQ7 364 aaPredicted RBP14.93□□□□□ -0.02
HMGB1-202ENST00000339872 CACTINQ8WUQ7 758 aaKnown RBP14.93□□□□□ -0.02
HMGB1-202ENST00000339872 DHTKD1Q96HY7 919 aaPredicted RBP14.93□□□□□ -0.02
HMGB1-202ENST00000339872 PDCD2LQ9BRP1 358 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 KRT18P05783 430 aaKnown RBP14.93□□□□□ -0.02
HMGB1-202ENST00000339872 CYP11B2P19099 503 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 PPP1R2P41236 205 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 CTTNQ14247 550 aaKnown RBP14.93□□□□□ -0.02
HMGB1-202ENST00000339872 DYDC2Q96IM9 177 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 TRIM47Q96LD4 638 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 RIT2Q99578 217 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 TUFT1Q9NNX1 390 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 JADE2Q9NQC1 790 aa14.93□□□□□ -0.02
HMGB1-202ENST00000339872 NPHP3-ACAD11A0A0J9YXS1 232 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 ZNF500O60304 480 aaPredicted RBP14.92□□□□□ -0.02
HMGB1-202ENST00000339872 POTEJP0CG39 1038 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 GSDMDP57764 484 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 CACNB1Q02641 598 aaPredicted RBP14.92□□□□□ -0.02
HMGB1-202ENST00000339872 RAD51AP2Q09MP3 1159 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 COASYQ13057 564 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 VSTM4Q8IW00 320 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 OPTNQ96CV9 577 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 PANK4Q9NVE7 773 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 PYCARDQ9ULZ3 195 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 LCTP09848 1927 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 CXCL11O14625 94 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 IRX3P78415 501 aaPredicted RBP14.92□□□□□ -0.02
HMGB1-202ENST00000339872 PPIL2Q13356 520 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 COBLL1Q53SF7 1204 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 LRRC8AQ8IWT6 810 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 TPH2Q8IWU9 490 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 P2RX5Q93086 422 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 HSD17B14Q9BPX1 270 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 AGO4Q9HCK5 861 aaKnown RBP14.92□□□□□ -0.02
HMGB1-202ENST00000339872 A1CFQ9NQ94 594 aaKnown RBP14.92□□□□□ -0.02
HMGB1-202ENST00000339872 CYP39A1Q9NYL5 469 aa14.92□□□□□ -0.02
HMGB1-202ENST00000339872 A0A1B0GTH6 734 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 BICDL2A1A5D9 508 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 TESPA1A2RU30 521 aaPredicted RBP14.91□□□□□ -0.02
HMGB1-202ENST00000339872 PEX10O60683 326 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 CCNE1P24864 410 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 HOXA7P31268 230 aaPredicted RBP14.91□□□□□ -0.02
HMGB1-202ENST00000339872 EHHADHQ08426 723 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 PSMD2Q13200 908 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 TTI2Q6NXR4 508 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 LBX2Q6XYB7 198 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 APTXQ7Z2E3 356 aaKnown RBP14.91□□□□□ -0.02
HMGB1-202ENST00000339872 CREBRFQ8IUR6 639 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 CCDC65Q8IXS2 484 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 SYT2Q8N9I0 419 aaPredicted RBP14.91□□□□□ -0.02
HMGB1-202ENST00000339872 CTAGE1Q96RT6 745 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 BHMT2Q9H2M3 363 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 ZNF408Q9H9D4 720 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 KCNJ18B7U540 433 aa14.91□□□□□ -0.02
HMGB1-202ENST00000339872 SLITRK3O94933 977 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms