RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 PRO3102Q9H379 93 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 PIDD1Q9HB75 910 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 FAM153AQ9UHL3 310 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.19□□□□□ -1.423e-6■■■■□ 21.1
CSDE1-202ENST00000339438 SAR1BQ9Y6B6 198 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 SCN10AQ9Y5Y9 1956 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 CLSTN1O94985 981 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 SSBP05455 408 aaKnown RBP eCLIP6.19□□□□□ -1.42
CSDE1-202ENST00000339438 NKX3-2P78367 333 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 RASGRF1Q13972 1273 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 PPP4R3AQ6IN85 833 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 MICALCLQ6ZW33 695 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 HELBQ8NG08 1087 aaPredicted RBP6.19□□□□□ -1.42
CSDE1-202ENST00000339438 CCDC51Q96ER9 411 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 ZIC5Q96T25 663 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 KDM4CQ9H3R0 1056 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 BLOC1S6Q9UL45 172 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 ZNF232Q9UNY5 417 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 B4DLN1 442 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 SEMA3EO15041 775 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 ATP4AP20648 1035 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 MARCKSP29966 332 aaPredicted RBP6.19□□□□□ -1.42
CSDE1-202ENST00000339438 ROR2Q01974 943 aaKnown RBP6.19□□□□□ -1.42
CSDE1-202ENST00000339438 MYO1EQ12965 1108 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 DHX32Q7L7V1 743 aaKnown RBP6.19□□□□□ -1.42
CSDE1-202ENST00000339438 SPATA21Q7Z572 469 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 AACSQ86V21 672 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 ZFPM1Q8IX07 1006 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 GALNT15Q8N3T1 639 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.19□□□□□ -1.42
CSDE1-202ENST00000339438 AGAP11Q8TF27 550 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 USP6NLQ92738 828 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 PLEKHG4BQ96PX9 1271 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 PANK4Q9NVE7 773 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 TSKSQ9UJT2 592 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 TSC2P49815 1807 aa6.19□□□□□ -1.42
CSDE1-202ENST00000339438 BHMG1C9JSJ3 638 aaPredicted RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 SMIM22K7EJ46 135 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 PDLIM1O00151 329 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 OPA1O60313 960 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 UPP2O95045 317 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 PAPOLAP51003 745 aaKnown RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 DPYDQ12882 1025 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 USP4Q13107 963 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 STK38Q15208 465 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 CCDC129Q6ZRS4 1044 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 RBM12BQ8IXT5 1001 aaKnown RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 CCDC47Q96A33 483 aaKnown RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 CENPHQ9H3R5 247 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 USP2O75604 605 aaPredicted RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 HSPA6P17066 643 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 NR1D1P20393 614 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 GRIN1Q05586 938 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 SF3A1Q15459 793 aaKnown RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 CCDC152Q4G0S7 254 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 PABPC1LQ4VXU2 614 aaKnown RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 GLE1Q53GS7 698 aaKnown RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 RNF187Q5TA31 235 aaPredicted RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 EMBQ6PCB8 327 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 TMTC1Q8IUR5 882 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 STK11IPQ8N1F8 1099 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 JAKMIP2Q96AA8 810 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 RSRC1Q96IZ7 334 aaKnown RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 SEC16BQ96JE7 1060 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 LACRTQ9GZZ8 138 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 ARHGEF10LQ9HCE6 1279 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 GDF3Q9NR23 364 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 NDUFA10O95299 355 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 SLC10A3P09131 477 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 ECHS1P30084 290 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 GBP2P32456 591 aaPredicted RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 EPHB4P54760 987 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 GHRHRQ02643 423 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 LAMB3Q13751 1172 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 CLASRPQ8N2M8 674 aaKnown RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 MLKLQ8NB16 471 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 TRIM58Q8NG06 486 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 TBC1D31Q96DN5 1066 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 CCDC114Q96M63 670 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 NLRP3Q96P20 1036 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 SLF1Q9BQI6 1058 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 TSGA10Q9BZW7 698 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 GPHNQ9NQX3 736 aaPredicted RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 PCMTD2Q9NV79 361 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 CNOT8Q9UFF9 292 aaKnown RBP6.18□□□□□ -1.42
CSDE1-202ENST00000339438 KCNH4Q9UQ05 1017 aa6.18□□□□□ -1.42
CSDE1-202ENST00000339438 DPPA5A6NC42 116 aa6.17□□□□□ -1.42
CSDE1-202ENST00000339438 ACTN4O43707 911 aaKnown RBP6.17□□□□□ -1.42
CSDE1-202ENST00000339438 KCNA4P22459 653 aa6.17□□□□□ -1.42
CSDE1-202ENST00000339438 ERCC5P28715 1186 aaPredicted RBP6.17□□□□□ -1.42
CSDE1-202ENST00000339438 PLCD1P51178 756 aa6.17□□□□□ -1.42
CSDE1-202ENST00000339438 PPP1R15BQ5SWA1 713 aa6.17□□□□□ -1.42
CSDE1-202ENST00000339438 REPS2Q8NFH8 660 aa6.17□□□□□ -1.42
CSDE1-202ENST00000339438 ATP6V1G3Q96LB4 118 aa6.17□□□□□ -1.42
CSDE1-202ENST00000339438 BOLA2Q9H3K6 86 aa6.17□□□□□ -1.42
CSDE1-202ENST00000339438 LRRC4CQ9HCJ2 640 aa6.17□□□□□ -1.42
CSDE1-202ENST00000339438 PAPOLBQ9NRJ5 636 aaKnown RBP6.17□□□□□ -1.42
CSDE1-202ENST00000339438 WBP1LQ9NX94 342 aa6.17□□□□□ -1.42
CSDE1-202ENST00000339438 DUSP10Q9Y6W6 482 aa6.17□□□□□ -1.42
CSDE1-202ENST00000339438 CNMDO75829 334 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms