RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 KLHL4Q9C0H6 718 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 ZNHIT2Q9UHR6 403 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 SPO11Q9Y5K1 396 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 RAB11FIP3O75154 756 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 CIB2O75838 187 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 TJP3O95049 919 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 S100A6P06703 90 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 RFC5P40937 340 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 NUP107P57740 925 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 KRT76Q01546 638 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 GUCY1A3Q02108 690 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 RC3H1Q5TC82 1133 aaKnown RBP4.5□□□□□ -1.69
NEDD4-201ENST00000338963 SYDE2Q5VT97 1194 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 FNDC8Q8TC99 324 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 AFG1LQ8WV93 481 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 MED30Q96HR3 178 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 CCDC43Q96MW1 224 aaKnown RBP4.5□□□□□ -1.69
NEDD4-201ENST00000338963 NUDCD1Q96RS6 583 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 SEZ6LQ9BYH1 1024 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 DNAI2Q9GZS0 605 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 ATP8A2Q9NTI2 1148 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 SUGT1Q9Y2Z0 365 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 EMILIN1Q9Y6C2 1016 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 WDR62O43379 1518 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 STK4Q13043 487 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 FAM133BQ5BKY9 247 aaKnown RBP4.5□□□□□ -1.69
NEDD4-201ENST00000338963 SPARTQ8N0X7 666 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 AZIN2Q96A70 460 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 CEP63Q96MT8 703 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 RPS6KC1Q96S38 1066 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 PYM1Q9BRP8 204 aaKnown RBP4.5□□□□□ -1.69
NEDD4-201ENST00000338963 PALMDQ9NP74 551 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 ATAD3AQ9NVI7 634 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 ARMC1Q9NVT9 282 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 AGPSO00116 658 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 AP3B1O00203 1094 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 ADCY3O60266 1144 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 SNX2O60749 519 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 LDHBP07195 334 aaKnown RBP4.5□□□□□ -1.69
NEDD4-201ENST00000338963 ITGB3BPQ13352 177 aaPredicted RBP4.5□□□□□ -1.69
NEDD4-201ENST00000338963 ZNF423Q2M1K9 1284 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 P3H1Q32P28 736 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 TSPYL6Q8N831 410 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 KCNN1Q92952 543 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 NAP1L4Q99733 375 aaKnown RBP4.5□□□□□ -1.69
NEDD4-201ENST00000338963 UQCC2Q9BRT2 126 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 OSBPL7Q9BZF2 842 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 TCF7L2Q9NQB0 619 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 STAP2Q9UGK3 403 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 MAFFQ9ULX9 164 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 GIT1Q9Y2X7 761 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 DISP3Q9P2K9 1392 aa4.5□□□□□ -1.69
NEDD4-201ENST00000338963 CPSF1Q10570 1443 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 UGGT2Q9NYU1 1516 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 KIF21AQ7Z4S6 1674 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 IGF2BP3O00425 579 aaKnown RBP eCLIP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 ALOX5P09917 674 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 M6PRP20645 277 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 IL32P24001 234 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 TMOD1P28289 359 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 ETV3P41162 512 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 PTDSS1P48651 473 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 AMPD2Q01433 879 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 RASA2Q15283 850 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 TSC22D1Q15714 1073 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CFAP221Q4G0U5 840 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 TTMPQ5BVD1 217 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 VMP1Q96GC9 406 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 AIFM2Q9BRQ8 373 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 TRPC7Q9HCX4 862 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 MAPK8IP1Q9UQF2 711 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 FAM32AQ9Y421 112 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 SNX14Q9Y5W7 946 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CEMIPQ8WUJ3 1361 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CPLX1O14810 134 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 TEX28O15482 410 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 HNRNPRO43390 633 aaKnown RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 BBOX1O75936 387 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 HALP42357 657 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 RGS21Q2M5E4 152 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CNPY1Q3B7I2 92 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 DEPDC1Q5TB30 811 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 BLOC1S2Q6QNY1 142 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 FRA10AC1Q70Z53 315 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 WAPLQ7Z5K2 1190 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 NDUFAF2Q8N183 169 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 C19orf44Q9H6X5 657 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 ZNF212Q9UDV6 495 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 RABGEF1Q9UJ41 708 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 TUBE1Q9UJT0 475 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 AGAP1Q9UPQ3 857 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 SNX9Q9Y5X1 595 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 OVOS2A0A0G2JMS6 1433 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 OVOS2A0A0J9YW53 1432 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 OVOS2Q6IE36 1432 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 GCC2Q8IWJ2 1684 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 KANSL1LA0AUZ9 987 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 SLC26A4O43511 780 aa4.49□□□□□ -1.69
NEDD4-201ENST00000338963 FARP2O94887 1054 aaPredicted RBP4.49□□□□□ -1.69
NEDD4-201ENST00000338963 CYP2C9P11712 490 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms