RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SPIRE1Q08AE8 756 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 HYAL1Q12794 435 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 LMAN2Q12907 356 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 RTP2Q5QGT7 225 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 ATF7IPQ6VMQ6 1270 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 IFNLR1Q8IU57 520 aaPredicted RBP1.99□□□□□ -2.09
LINC00643-201ENST00000334389 CERS5Q8N5B7 392 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 EFCAB3Q8N7B9 438 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 TMEM105Q8N8V8 129 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 FAM133AQ8N9E0 248 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 PJA1Q8NG27 643 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 TTLL11Q8NHH1 800 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 MBD6Q96DN6 1003 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 FGD4Q96M96 766 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 DEFB118Q96PH6 123 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 MMTAG2Q9BU76 263 aaKnown RBP1.99□□□□□ -2.09
LINC00643-201ENST00000334389 ADAM33Q9BZ11 813 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 ASCC2Q9H1I8 757 aaPredicted RBP1.99□□□□□ -2.09
LINC00643-201ENST00000334389 TMEM160Q9NX00 188 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 MAGEC2Q9UBF1 373 aaPredicted RBP1.99□□□□□ -2.09
LINC00643-201ENST00000334389 MKL2Q9ULH7 1088 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 MAPK8IP1Q9UQF2 711 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 CNTNAP2Q9UHC6 1331 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 TTC3P53804 2025 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 MBLAC1A4D2B0 266 aaPredicted RBP1.99□□□□□ -2.09
LINC00643-201ENST00000334389 J3QKU1 62 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 KLHL41O60662 606 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 GJB3O75712 270 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 C1QL1O75973 258 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 ZFAND5O76080 213 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 LDHCP07864 332 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 IQCF3P0C7M6 154 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 NCAM1P13591 858 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 EIF2DP41214 584 aaKnown RBP1.99□□□□□ -2.09
LINC00643-201ENST00000334389 SLC19A1P41440 591 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 HDAC4P56524 1084 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 HERVK_113P62684 666 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 SCRN1Q12765 414 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 RASA3Q14644 834 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 TRIM60Q495X7 471 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 OTOP3Q7RTS5 596 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 CCDC117Q8IWD4 279 aaPredicted RBP1.99□□□□□ -2.09
LINC00643-201ENST00000334389 ANKS1AQ92625 1134 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 ELSPBP1Q96BH3 223 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 MED8Q96G25 268 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 SCARF2Q96GP6 870 aaPredicted RBP1.99□□□□□ -2.09
LINC00643-201ENST00000334389 SLITRK1Q96PX8 696 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 MAP3K14Q99558 947 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 NKX2-4Q9H2Z4 354 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 MYH16Q9H6N6 1097 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 GMPR2Q9P2T1 348 aaKnown RBP1.99□□□□□ -2.09
LINC00643-201ENST00000334389 MRPS17Q9Y2R5 130 aaKnown RBP1.99□□□□□ -2.09
LINC00643-201ENST00000334389 TRANK1O15050 2925 aa1.99□□□□□ -2.09
LINC00643-201ENST00000334389 LGR5O75473 907 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 LAG3P18627 525 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 BMPR1AP36894 532 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 EPHB4P54760 987 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 SHBQ15464 509 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 UVSSAQ2YD98 709 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 C9orf50Q5SZB4 431 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 C1QTNF12Q5T7M4 302 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 PPP2R2DQ66LE6 453 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 SLC23A3Q6PIS1 610 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 PRR23CQ6ZRP0 262 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 GPR149Q86SP6 731 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 CLEC14AQ86T13 490 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 FAM160B2Q86V87 743 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 RASSF3Q86WH2 238 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ATOH1Q92858 354 aaPredicted RBP1.98□□□□□ -2.09
LINC00643-201ENST00000334389 L3MBTL2Q969R5 705 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 KCNK17Q96T54 332 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 USP44Q9H0E7 712 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP1.98□□□□□ -2.09
LINC00643-201ENST00000334389 CWC25Q9NXE8 425 aaPredicted RBP1.98□□□□□ -2.09
LINC00643-201ENST00000334389 DKK3Q9UBP4 350 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 FAM198AQ9UFP1 575 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 CIZ1Q9ULV3 898 aaPredicted RBP1.98□□□□□ -2.09
LINC00643-201ENST00000334389 PCDHGC5Q9Y5F6 944 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 KLF2Q9Y5W3 355 aaPredicted RBP1.98□□□□□ -2.09
LINC00643-201ENST00000334389 LRP4O75096 1905 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 NFASCO94856 1347 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 STXBP3O00186 592 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 TOR1BO14657 336 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 FAM163BP0C2L3 166 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 TGFB3P10600 412 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ATP2A2P16615 1042 aaKnown RBP1.98□□□□□ -2.09
LINC00643-201ENST00000334389 SLC26A2P50443 739 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ERVPABLB-1P60509 514 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 GTF2IP78347 998 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 BEND3Q5T5X7 828 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 NIPA1Q7RTP0 329 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 GALNT15Q8N3T1 639 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ENGASEQ8NFI3 743 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 DEPDC1BQ8WUY9 529 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 GAB3Q8WWW8 586 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 IFT43Q96FT9 208 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 GPR88Q9GZN0 384 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 SLC12A5Q9H2X9 1139 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 TICRRQ7Z2Z1 1910 aa1.98□□□□□ -2.09
LINC00643-201ENST00000334389 ZFHX2Q9C0A1 2572 aaPredicted RBP1.98□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms