RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ARHGAP4P98171 946 aa18.08■□□□□ 0.48
CLN3-201ENST00000333496 MTMR1Q13613 665 aa18.08■□□□□ 0.48
CLN3-201ENST00000333496 TDHQ8IZJ6 230 aa18.08■□□□□ 0.48
CLN3-201ENST00000333496 REXO1Q8N1G1 1221 aaKnown RBP18.08■□□□□ 0.48
CLN3-201ENST00000333496 NECAB1Q8N987 351 aa18.08■□□□□ 0.48
CLN3-201ENST00000333496 C16orf70Q9BSU1 422 aa18.08■□□□□ 0.48
CLN3-201ENST00000333496 SCN5AQ14524 2016 aa18.08■□□□□ 0.48
CLN3-201ENST00000333496 MAFGO15525 162 aa18.07■□□□□ 0.48
CLN3-201ENST00000333496 CHMP4BP1P59074 171 aa18.07■□□□□ 0.48
CLN3-201ENST00000333496 FAM47CQ5HY64 1035 aa18.07■□□□□ 0.48
CLN3-201ENST00000333496 CDHR1Q96JP9 859 aa18.07■□□□□ 0.48
CLN3-201ENST00000333496 GPR20Q99678 358 aa18.07■□□□□ 0.48
CLN3-201ENST00000333496 C22orf23Q9BZE7 217 aa18.07■□□□□ 0.48
CLN3-201ENST00000333496 PPP1R12CQ9BZL4 782 aa18.07■□□□□ 0.48
CLN3-201ENST00000333496 KCNH7Q9NS40 1196 aa18.07■□□□□ 0.48
CLN3-201ENST00000333496 WDR81Q562E7 1941 aa18.07■□□□□ 0.48
CLN3-201ENST00000333496 UMODL1Q5DID0 1318 aa18.07■□□□□ 0.48
CLN3-201ENST00000333496 ARP10275 920 aa18.06■□□□□ 0.48
CLN3-201ENST00000333496 RBM25P49756 843 aaKnown RBP18.06■□□□□ 0.48
CLN3-201ENST00000333496 PSEN2P49810 448 aa18.06■□□□□ 0.48
CLN3-201ENST00000333496 EPHB4P54760 987 aa18.06■□□□□ 0.48
CLN3-201ENST00000333496 PTPN11Q06124 597 aaPredicted RBP18.06■□□□□ 0.48
CLN3-201ENST00000333496 NPY5RQ15761 445 aa18.06■□□□□ 0.48
CLN3-201ENST00000333496 CEP55Q53EZ4 464 aa18.06■□□□□ 0.48
CLN3-201ENST00000333496 SESTD1Q86VW0 696 aa18.06■□□□□ 0.48
CLN3-201ENST00000333496 GTF3C6Q969F1 213 aa18.06■□□□□ 0.48
CLN3-201ENST00000333496 PKD2L1Q9P0L9 805 aa18.06■□□□□ 0.48
CLN3-201ENST00000333496 MEIS1O00470 390 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 EDIL3O43854 480 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 CDKL5O76039 1030 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 CYP3A4P08684 503 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 CYP2C9P11712 490 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 CYP2C18P33260 490 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 NLRP5P59047 1200 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 ST3GAL1Q11201 340 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 MFSD10Q14728 455 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 KIAA0753Q2KHM9 967 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 MCTP2Q6DN12 878 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 MFSD5Q6N075 450 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 GIMAP8Q8ND71 665 aaPredicted RBP18.05■□□□□ 0.48
CLN3-201ENST00000333496 BICD2Q8TD16 824 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 CTAGE1Q96RT6 745 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 ALG1Q9BT22 464 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 NOC4LQ9BVI4 516 aaKnown RBP18.05■□□□□ 0.48
CLN3-201ENST00000333496 HDAC6Q9UBN7 1215 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 STK36Q9NRP7 1315 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 TANC1Q9C0D5 1861 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 IGLV3-22A0A075B6J6 115 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 FAM86B1E9PN63 330 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 M0R2N6 131 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 NOP56O00567 594 aaKnown RBP18.05■□□□□ 0.48
CLN3-201ENST00000333496 LGALS2P05162 132 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 FAM86B2P0C5J1 330 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 SP4Q02446 784 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 C9orf50Q5SZB4 431 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 GDF6Q6KF10 455 aaPredicted RBP18.05■□□□□ 0.48
CLN3-201ENST00000333496 KATNAL1Q9BW62 490 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 HIPK3Q9H422 1215 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 GTF2IRD1Q9UHL9 959 aa18.05■□□□□ 0.48
CLN3-201ENST00000333496 SOX1O00570 391 aaPredicted RBP18.04■□□□□ 0.48
CLN3-201ENST00000333496 SUPT20HL2P0C7V6 817 aa18.04■□□□□ 0.48
CLN3-201ENST00000333496 FDPSP14324 419 aaKnown RBP18.04■□□□□ 0.48
CLN3-201ENST00000333496 FPGSQ05932 587 aa18.04■□□□□ 0.48
CLN3-201ENST00000333496 HIC1Q14526 733 aa18.04■□□□□ 0.48
CLN3-201ENST00000333496 SHHQ15465 462 aa18.04■□□□□ 0.48
CLN3-201ENST00000333496 WNT8AQ9H1J5 351 aa18.04■□□□□ 0.48
CLN3-201ENST00000333496 GJB4Q9NTQ9 266 aa18.04■□□□□ 0.48
CLN3-201ENST00000333496 PCDHA4Q9UN74 947 aa18.04■□□□□ 0.48
CLN3-201ENST00000333496 GSTTP1A0A1W2PQM5 241 aa18.03■□□□□ 0.48
CLN3-201ENST00000333496 H3BRB1 525 aa18.03■□□□□ 0.48
CLN3-201ENST00000333496 NIPA1Q7RTP0 329 aa18.03■□□□□ 0.48
CLN3-201ENST00000333496 TRIM50Q86XT4 487 aa18.03■□□□□ 0.48
CLN3-201ENST00000333496 DAGLBQ8NCG7 672 aa18.03■□□□□ 0.48
CLN3-201ENST00000333496 NSUN7Q8NE18 718 aaKnown RBP18.03■□□□□ 0.48
CLN3-201ENST00000333496 TUT1Q9H6E5 874 aaKnown RBP18.03■□□□□ 0.48
CLN3-201ENST00000333496 AGO4Q9HCK5 861 aaKnown RBP18.03■□□□□ 0.48
CLN3-201ENST00000333496 ORC3Q9UBD5 711 aaPredicted RBP18.03■□□□□ 0.48
CLN3-201ENST00000333496 KCNJ14Q9UNX9 436 aa18.03■□□□□ 0.48
CLN3-201ENST00000333496 TET1Q8NFU7 2136 aa18.03■□□□□ 0.48
CLN3-201ENST00000333496 CSF2RAP15509 400 aa18.02■□□□□ 0.48
CLN3-201ENST00000333496 ZNF76P36508 570 aa18.02■□□□□ 0.48
CLN3-201ENST00000333496 CCL23P55773 120 aa18.02■□□□□ 0.48
CLN3-201ENST00000333496 ITGB3BPQ13352 177 aaPredicted RBP18.02■□□□□ 0.48
CLN3-201ENST00000333496 PTGISQ16647 500 aa18.02■□□□□ 0.48
CLN3-201ENST00000333496 C16orf59Q7L2K0 433 aa18.02■□□□□ 0.48
CLN3-201ENST00000333496 BLIDQ8IZY5 108 aa18.02■□□□□ 0.48
CLN3-201ENST00000333496 FAM177A1Q8N128 213 aaPredicted RBP18.02■□□□□ 0.48
CLN3-201ENST00000333496 C7orf31Q8N865 590 aa18.02■□□□□ 0.48
CLN3-201ENST00000333496 PHF20Q9BVI0 1012 aa18.02■□□□□ 0.48
CLN3-201ENST00000333496 NFASCO94856 1347 aa18.02■□□□□ 0.48
CLN3-201ENST00000333496 MYH9P35579 1960 aaKnown RBP18.02■□□□□ 0.47
CLN3-201ENST00000333496 CIITAP33076 1130 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 TCF7P36402 384 aaPredicted RBP18.01■□□□□ 0.47
CLN3-201ENST00000333496 LRIT3Q3SXY7 679 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 UTP14CQ5TAP6 766 aaKnown RBP18.01■□□□□ 0.47
CLN3-201ENST00000333496 PLA2G4DQ86XP0 818 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 TMEM199Q8N511 208 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 LIMCH1Q9UPQ0 1083 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 JAK2O60674 1132 aa18.01■□□□□ 0.47
CLN3-201ENST00000333496 ZNF200P98182 395 aaPredicted RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms