RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 WRNIP1Q96S55 665 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 SUDS3Q9H7L9 328 aaPredicted RBP11.08□□□□□ -0.64
CHD3-201ENST00000330494 ZNF215Q9UL58 517 aaPredicted RBP11.08□□□□□ -0.64
CHD3-201ENST00000330494 FNDC3AQ9Y2H6 1198 aaKnown RBP11.08□□□□□ -0.64
CHD3-201ENST00000330494 PSDA5PKW4 1024 aaPredicted RBP11.08□□□□□ -0.64
CHD3-201ENST00000330494 ATP11AP98196 1134 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 BFSP1Q12934 665 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 TMC4Q7Z404 712 aa11.08□□□□□ -0.64
CHD3-201ENST00000330494 ADD3Q9UEY8 706 aaKnown RBP11.08□□□□□ -0.64
CHD3-201ENST00000330494 POC1B-GALNT4F8VUJ3 575 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 MYL3P08590 195 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 IFNAR1P17181 557 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 IREB2P48200 963 aaKnown RBP11.07□□□□□ -0.64
CHD3-201ENST00000330494 EMILIN3Q9NT22 766 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 GCKP35557 465 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 MRPS25P82663 173 aaKnown RBP11.07□□□□□ -0.64
CHD3-201ENST00000330494 PPP2R5AQ15172 486 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 LMNTD2Q8IXW0 634 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 PCDHA6Q9UN73 950 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 PCDHA8Q9Y5H6 950 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 A0A1W2PQ27 194 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 A0A1W2PQ64 194 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 A0A1W2PQD8 194 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 TSTA3Q13630 321 aaPredicted RBP11.07□□□□□ -0.64
CHD3-201ENST00000330494 TMCO4Q5TGY1 634 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 CEP120Q8N960 986 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 SKA2Q8WVK7 121 aaPredicted RBP11.07□□□□□ -0.64
CHD3-201ENST00000330494 GSDMAQ96QA5 445 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 MXD3Q9BW11 206 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 SRPRBQ9Y5M8 271 aaKnown RBP11.07□□□□□ -0.64
CHD3-201ENST00000330494 POLR1AO95602 1720 aaPredicted RBP11.07□□□□□ -0.64
CHD3-201ENST00000330494 A6NJR5 290 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 RNF8O76064 485 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 FOXO4P98177 505 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 SNX25Q9H3E2 840 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 LRRC7Q96NW7 1537 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 ATF2P15336 505 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 MAPK4P31152 587 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 KCTD16Q68DU8 428 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 AK8Q96MA6 479 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 WDR11Q9BZH6 1224 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 BHMT2Q9H2M3 363 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 PLCB1Q9NQ66 1216 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 SMYD2Q9NRG4 433 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 SEC31AO94979 1220 aaKnown RBP11.07□□□□□ -0.64
CHD3-201ENST00000330494 TRAPPC10P48553 1259 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 RPAINQ86UA6 219 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 TMEM47Q9BQJ4 181 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 PARVGQ9HBI0 331 aa11.07□□□□□ -0.64
CHD3-201ENST00000330494 STX2P32856 288 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 NEDD9Q14511 834 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 TRIP13Q15645 432 aaPredicted RBP11.06□□□□□ -0.64
CHD3-201ENST00000330494 STAG1Q8WVM7 1258 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 MAIP1Q8WWC4 291 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 RIC8AQ9NPQ8 531 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 GDAQ9Y2T3 454 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 H0YCG3 227 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 SSTR3P32745 418 aaPredicted RBP11.06□□□□□ -0.64
CHD3-201ENST00000330494 ZNF394Q53GI3 561 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 POTEDQ86YR6 584 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 KIF9Q9HAQ2 790 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 ATP1A3P13637 1013 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 CUL4AQ13619 759 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 MCUR1Q96AQ8 359 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 LRFN2Q9ULH4 789 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 TRIM49BA6NDI0 452 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 STAT3P40763 770 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 WHAMMP3Q1A5X7 153 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 LGSNQ5TDP6 509 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 CCDC62Q6P9F0 684 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 B4GALNT4Q76KP1 1039 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 RYBPQ8N488 228 aaPredicted RBP11.06□□□□□ -0.64
CHD3-201ENST00000330494 ENAHQ8N8S7 591 aaPredicted RBP11.06□□□□□ -0.64
CHD3-201ENST00000330494 DHTKD1Q96HY7 919 aaPredicted RBP11.06□□□□□ -0.64
CHD3-201ENST00000330494 CDC27P30260 824 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 CLEC4GQ6UXB4 293 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 PPFIBP2Q8ND30 876 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.06□□□□□ -0.64
CHD3-201ENST00000330494 MAGOHBQ96A72 148 aaKnown RBP11.06□□□□□ -0.64
CHD3-201ENST00000330494 TNS3Q68CZ2 1445 aa11.06□□□□□ -0.64
CHD3-201ENST00000330494 CDO1Q16878 200 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 NOP9Q86U38 636 aaKnown RBP11.05□□□□□ -0.64
CHD3-201ENST00000330494 HAUS1Q96CS2 278 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 CAMSAP1Q5T5Y3 1602 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 PSAPP07602 524 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 SLFN14P0C7P3 912 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 GAP43P17677 238 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 RSRC2Q7L4I2 434 aaKnown RBP11.05□□□□□ -0.64
CHD3-201ENST00000330494 CACTINQ8WUQ7 758 aaKnown RBP11.05□□□□□ -0.64
CHD3-201ENST00000330494 MYO1FO00160 1098 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 RFC1P35251 1148 aaPredicted RBP11.05□□□□□ -0.64
CHD3-201ENST00000330494 SLC7A5Q01650 507 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 MTMR3Q13615 1198 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 TMEM179Q6ZVK1 233 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 PNMA8AQ86V59 439 aaPredicted RBP11.05□□□□□ -0.64
CHD3-201ENST00000330494 ARID5BQ14865 1188 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 CCNYQ8ND76 341 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 CABS1Q96KC9 395 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 RCOR1Q9UKL0 485 aa11.05□□□□□ -0.64
CHD3-201ENST00000330494 NBPF26B4DH59 902 aa11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms