RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 CNPY4Q8N129 248 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 PNMA5Q96PV4 448 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 PIGSQ96S52 555 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 GEMIN8Q9NWZ8 242 aaKnown RBP16.07■□□□□ 0.16
SSBP3-201ENST00000326956 TMEM260Q9NX78 707 aa16.07■□□□□ 0.16
SSBP3-201ENST00000326956 MYH1P12882 1939 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 RBAK-RBAKDNI3L0D1 243 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 CLEC4GQ6UXB4 293 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 NLRP14Q86W24 1093 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 NLRP3Q96P20 1036 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 CCT8L2Q96SF2 557 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 PPANQ9NQ55 473 aaKnown RBP16.06■□□□□ 0.16
SSBP3-201ENST00000326956 RREB1Q92766 1687 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 FXR2P51116 673 aaKnown RBP eCLIP16.06■□□□□ 0.168e-6■■■■□ 21.8
SSBP3-201ENST00000326956 GSTO1P78417 241 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 FAM26FQ5R3K3 315 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 MEI1Q5TIA1 1274 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 MAPKAPK5Q8IW41 473 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 EYA3Q99504 573 aa16.06■□□□□ 0.16
SSBP3-201ENST00000326956 TAF1DQ9H5J8 278 aaPredicted RBP16.06■□□□□ 0.16
SSBP3-201ENST00000326956 BCCIPQ9P287 314 aaKnown RBP eCLIP16.06■□□□□ 0.16
SSBP3-201ENST00000326956 MYO1FO00160 1098 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 RAD51CO43502 376 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 SEC24CP53992 1094 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 IFI16Q16666 785 aaKnown RBP16.05■□□□□ 0.16
SSBP3-201ENST00000326956 FAM133AQ8N9E0 248 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 PRPF38AQ8NAV1 312 aaKnown RBP16.05■□□□□ 0.16
SSBP3-201ENST00000326956 LRRC45Q96CN5 670 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 TBC1D7Q9P0N9 293 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 GNA14O95837 355 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 RDXP35241 583 aaKnown RBP16.05■□□□□ 0.16
SSBP3-201ENST00000326956 IFT88Q13099 833 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 NELFCDQ8IXH7 590 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 USP38Q8NB14 1042 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 UBA5Q9GZZ9 404 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 PANK4Q9NVE7 773 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 COL22A1Q8NFW1 1626 aaPredicted RBP16.05■□□□□ 0.16
SSBP3-201ENST00000326956 CEP104O60308 925 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 FSBPO95073 299 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 LDHCP07864 332 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 RASA1P20936 1047 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 CDR1P51861 262 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 CCDC121Q6ZUS5 278 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 GLIS3Q8NEA6 775 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 WDR66Q8TBY9 1149 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 MYCBPAPQ8TBZ2 947 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 PCDHGC5Q9Y5F6 944 aa16.05■□□□□ 0.16
SSBP3-201ENST00000326956 A0A087X0T9 212 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 TMCO5BA8MYB1 307 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 TLR2O60603 784 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 TDP2O95551 362 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 FAM228BP0C875 321 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 TNNI2P48788 182 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 ADCY7P51828 1080 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 COASYQ13057 564 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 PDIA5Q14554 519 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 DIXDC1Q155Q3 683 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 PAXIP1Q6ZW49 1069 aaPredicted RBP16.04■□□□□ 0.16
SSBP3-201ENST00000326956 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.04■□□□□ 0.169e-10■■■■■ 79.8
SSBP3-201ENST00000326956 INPP4AQ96PE3 977 aaPredicted RBP16.04■□□□□ 0.16
SSBP3-201ENST00000326956 MTMR9Q96QG7 549 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 SPAG5Q96R06 1193 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 LAMB1P07942 1786 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 CTNNA1P35221 906 aaKnown RBP16.04■□□□□ 0.16
SSBP3-201ENST00000326956 KCNV1Q6PIU1 500 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 RUFY4Q6ZNE9 571 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 ZHX3Q9H4I2 956 aa16.04■□□□□ 0.16
SSBP3-201ENST00000326956 SLC37A4O43826 429 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 FAM107AO95990 144 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 KRT18P05783 430 aaKnown RBP16.03■□□□□ 0.16
SSBP3-201ENST00000326956 HSPA9P38646 679 aaKnown RBP16.03■□□□□ 0.16
SSBP3-201ENST00000326956 HDLBPQ00341 1268 aaKnown RBP16.03■□□□□ 0.16
SSBP3-201ENST00000326956 CUL1Q13616 776 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 YTHDF3Q7Z739 585 aaKnown RBP16.03■□□□□ 0.16
SSBP3-201ENST00000326956 CCDC65Q8IXS2 484 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 PIK3R5Q8WYR1 880 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 CEP63Q96MT8 703 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 KANSL2Q9H9L4 492 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 MAP2K2P36507 400 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 PPARDQ03181 441 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 SEPT2Q15019 361 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 TRADDQ15628 312 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 DDB1Q16531 1140 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 PPP4R3AQ6IN85 833 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 LRIG3Q6UXM1 1119 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 C1orf131Q8NDD1 294 aaKnown RBP16.03■□□□□ 0.16
SSBP3-201ENST00000326956 UBLCP1Q8WVY7 318 aaPredicted RBP16.03■□□□□ 0.16
SSBP3-201ENST00000326956 PBKQ96KB5 322 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 PACSIN1Q9BY11 444 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 ISCUQ9H1K1 167 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 COL4A1P02462 1669 aa16.03■□□□□ 0.16
SSBP3-201ENST00000326956 TAF1P21675 1872 aa16.02■□□□□ 0.16
SSBP3-201ENST00000326956 GOLGA6L7A0A1B0GV03 622 aa16.02■□□□□ 0.16
SSBP3-201ENST00000326956 NOL4O94818 638 aa16.02■□□□□ 0.16
SSBP3-201ENST00000326956 CDK8P49336 464 aa16.02■□□□□ 0.16
SSBP3-201ENST00000326956 TXNRD3Q86VQ6 643 aa16.02■□□□□ 0.16
SSBP3-201ENST00000326956 COA7Q96BR5 231 aa16.02■□□□□ 0.16
SSBP3-201ENST00000326956 NUDT12Q9BQG2 462 aa16.02■□□□□ 0.16
SSBP3-201ENST00000326956 TMBIM4Q9HC24 238 aa16.02■□□□□ 0.16
SSBP3-201ENST00000326956 PLCB1Q9NQ66 1216 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms