RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 CCDC188H7C350 402 aa16.08■□□□□ 0.17
TCOF1-201ENST00000323668 GFPT2O94808 682 aa16.08■□□□□ 0.17
TCOF1-201ENST00000323668 SBK1Q52WX2 424 aa16.08■□□□□ 0.17
TCOF1-201ENST00000323668 C6orf163Q5TEZ5 329 aa16.08■□□□□ 0.17
TCOF1-201ENST00000323668 MAIP1Q8WWC4 291 aa16.08■□□□□ 0.17
TCOF1-201ENST00000323668 FAM237AA0A1B0GTK4 181 aa16.08■□□□□ 0.17
TCOF1-201ENST00000323668 ESYT3A0FGR9 886 aa16.08■□□□□ 0.17
TCOF1-201ENST00000323668 LIN9Q5TKA1 542 aa16.08■□□□□ 0.17
TCOF1-201ENST00000323668 LMTK3Q96Q04 1460 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 N4BP1O75113 896 aaKnown RBP16.08■□□□□ 0.16
TCOF1-201ENST00000323668 GAP43P17677 238 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 GBP1P32455 592 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 MGARPQ8TDB4 240 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 HPS3Q969F9 1004 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 CEP95Q96GE4 821 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 IWS1Q96ST2 819 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 TMEM260Q9NX78 707 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 BUB1BO60566 1050 aaPredicted RBP16.08■□□□□ 0.16
TCOF1-201ENST00000323668 GRAPQ13588 217 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 GRAPLQ8TC17 118 aaPredicted RBP16.08■□□□□ 0.16
TCOF1-201ENST00000323668 RIN2Q8WYP3 895 aaPredicted RBP16.08■□□□□ 0.16
TCOF1-201ENST00000323668 C7orf25Q9BPX7 421 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 TMEM60Q9H2L4 133 aa16.08■□□□□ 0.16
TCOF1-201ENST00000323668 PLTPP55058 493 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 VSIG1Q86XK7 387 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 ZNF446Q9NWS9 450 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 NOVA2Q9UNW9 492 aaKnown RBP16.07■□□□□ 0.16
TCOF1-201ENST00000323668 CEP83Q9Y592 693 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 TCHHQ07283 1943 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 TRIM37O94972 964 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 ATP11AP98196 1134 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 SP4Q02446 784 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 COASYQ13057 564 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 PLAAQ9Y263 795 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 PDS5AQ29RF7 1337 aaKnown RBP16.07■□□□□ 0.16
TCOF1-201ENST00000323668 BACH1O14867 736 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 FGFR2P21802 821 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 KCNH2Q12809 1159 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 ANKRD42Q8N9B4 389 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 NEDD1Q8NHV4 660 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 CHURC1Q8WUH1 139 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 INTS9Q9NV88 658 aaKnown RBP16.07■□□□□ 0.16
TCOF1-201ENST00000323668 TRIM66O15016 1216 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 SEC23AQ15436 765 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 HPCAL4Q9UM19 191 aa16.07■□□□□ 0.16
TCOF1-201ENST00000323668 BBOX1O75936 387 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 PRPF6O94906 941 aaKnown RBP16.06■□□□□ 0.16
TCOF1-201ENST00000323668 PDXDC1Q6P996 788 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 ARMC9Q7Z3E5 817 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 SPZ1Q9BXG8 430 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 KANSL2Q9H9L4 492 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 TCRBV5S4A2TA0A5A2 114 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 CTNND1O60716 968 aaKnown RBP16.06■□□□□ 0.16
TCOF1-201ENST00000323668 WDR93Q6P2C0 686 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 KIAA0825Q8IV33 1275 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 PPM1KQ8N3J5 372 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 PPP1R14CQ8TAE6 165 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 RICTORQ6R327 1708 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 NWD1Q149M9 1564 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 TDP2O95551 362 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 STX2P32856 288 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 MESDQ14696 234 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 SF3B3Q15393 1217 aaKnown RBP16.06■□□□□ 0.16
TCOF1-201ENST00000323668 DOK7Q18PE1 504 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 RUNDC3BQ96NL0 473 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 FMO2Q99518 471 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 DLG5Q8TDM6 1919 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 K7ENM7 598 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 CLNS1AP54105 237 aaKnown RBP16.06■□□□□ 0.16
TCOF1-201ENST00000323668 MMS22LQ6ZRQ5 1243 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 MIER3Q7Z3K6 550 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 CCDC197Q8NCU1 140 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 KIFC2Q96AC6 838 aa16.06■□□□□ 0.16
TCOF1-201ENST00000323668 E9PMD0 336 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 ZRANB2O95218 330 aaKnown RBP eCLIP16.05■□□□□ 0.16
TCOF1-201ENST00000323668 POLR2MP0CAP2 368 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 MYL7Q01449 175 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 LRCH2Q5VUJ6 765 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 ICE2Q659A1 982 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 RUBCNQ92622 972 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 GPR101Q96P66 508 aaPredicted RBP16.05■□□□□ 0.16
TCOF1-201ENST00000323668 TFR2Q9UP52 801 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 ATP2A2P16615 1042 aaKnown RBP16.05■□□□□ 0.16
TCOF1-201ENST00000323668 ANO3Q9BYT9 981 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 BHMT2Q9H2M3 363 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 KNDC1Q76NI1 1749 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 SSU72P8A0A1W2PR75 194 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 CPXCR1Q8N123 301 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 MXD3Q9BW11 206 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 PASKQ96RG2 1323 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 PDIA5Q14554 519 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 TRAPPC11Q7Z392 1133 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 FAM212AQ96EL1 285 aa16.05■□□□□ 0.16
TCOF1-201ENST00000323668 GRID2IPA4D2P6 1211 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 LRRN2O75325 713 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 CAMTA2O94983 1202 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 BMP6P22004 513 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 IFNAR2P48551 515 aa16.04■□□□□ 0.16
TCOF1-201ENST00000323668 EIF3BP55884 814 aaKnown RBP16.04■□□□□ 0.16
TCOF1-201ENST00000323668 MDM2Q00987 491 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms