RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 ZNF76P36508 570 aa18.38■□□□□ 0.53
HDDC2-201ENST00000318787 PTPN11Q06124 597 aaPredicted RBP18.38■□□□□ 0.53
HDDC2-201ENST00000318787 PSRC1Q6PGN9 363 aaPredicted RBP18.38■□□□□ 0.53
HDDC2-201ENST00000318787 METTL7BQ6UX53 244 aa18.38■□□□□ 0.53
HDDC2-201ENST00000318787 ZNF365Q70YC5 407 aa18.38■□□□□ 0.53
HDDC2-201ENST00000318787 FBXL16Q8N461 479 aa18.38■□□□□ 0.53
HDDC2-201ENST00000318787 RETREG2Q8NC44 543 aa18.38■□□□□ 0.53
HDDC2-201ENST00000318787 CCDC12Q8WUD4 166 aaPredicted RBP18.38■□□□□ 0.53
HDDC2-201ENST00000318787 GPRASP2Q96D09 838 aa18.38■□□□□ 0.53
HDDC2-201ENST00000318787 IL23AQ9NPF7 189 aa18.38■□□□□ 0.53
HDDC2-201ENST00000318787 LGALS2P05162 132 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 ITGB5P18084 799 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 TMEM240Q5SV17 173 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 OTOP2Q7RTS6 562 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 TRIM50Q86XT4 487 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 TRIM22Q8IYM9 498 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 CDHR1Q96JP9 859 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 GLT8D2Q9H1C3 349 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 C6orf50Q9HD87 102 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 VPS54Q9P1Q0 977 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 TELO2Q9Y4R8 837 aa18.37■□□□□ 0.53
HDDC2-201ENST00000318787 ZBBXA8MT70 800 aa18.36■□□□□ 0.53
HDDC2-201ENST00000318787 H3BRB1 525 aa18.36■□□□□ 0.53
HDDC2-201ENST00000318787 ATP9AO75110 1047 aa18.36■□□□□ 0.53
HDDC2-201ENST00000318787 FOSP01100 380 aaPredicted RBP18.36■□□□□ 0.53
HDDC2-201ENST00000318787 SSRP1Q08945 709 aaKnown RBP18.36■□□□□ 0.53
HDDC2-201ENST00000318787 BFSP2Q13515 415 aa18.36■□□□□ 0.53
HDDC2-201ENST00000318787 PKN1Q16512 942 aa18.36■□□□□ 0.53
HDDC2-201ENST00000318787 C16orf59Q7L2K0 433 aa18.36■□□□□ 0.53
HDDC2-201ENST00000318787 CCDC155Q8N6L0 562 aa18.36■□□□□ 0.53
HDDC2-201ENST00000318787 GIMAP8Q8ND71 665 aaPredicted RBP18.36■□□□□ 0.53
HDDC2-201ENST00000318787 GPR20Q99678 358 aa18.36■□□□□ 0.53
HDDC2-201ENST00000318787 RNF26Q9BY78 433 aaPredicted RBP18.36■□□□□ 0.53
HDDC2-201ENST00000318787 TUT1Q9H6E5 874 aaKnown RBP18.36■□□□□ 0.53
HDDC2-201ENST00000318787 GTF2IRD1Q9UHL9 959 aa18.36■□□□□ 0.53
HDDC2-201ENST00000318787 UBIAD1Q9Y5Z9 338 aa18.36■□□□□ 0.53
HDDC2-201ENST00000318787 FGBP02675 491 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 IFNAR1P17181 557 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 ZNF200P98182 395 aaPredicted RBP18.35■□□□□ 0.53
HDDC2-201ENST00000318787 AP3B2Q13367 1082 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 NTRK3Q16288 839 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 ZNF697Q5TEC3 545 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 GPR153Q6NV75 609 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 CPLX2Q6PUV4 134 aaKnown RBP18.35■□□□□ 0.53
HDDC2-201ENST00000318787 RPUSD2Q8IZ73 545 aaKnown RBP18.35■□□□□ 0.53
HDDC2-201ENST00000318787 REXO1Q8N1G1 1221 aaKnown RBP18.35■□□□□ 0.53
HDDC2-201ENST00000318787 CCDC148Q8NFR7 591 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 RASGRP4Q8TDF6 673 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 UIMC1Q96RL1 719 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 C16orf70Q9BSU1 422 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 JADE2Q9NQC1 790 aa18.35■□□□□ 0.53
HDDC2-201ENST00000318787 KCNA2P16389 499 aa18.34■□□□□ 0.53
HDDC2-201ENST00000318787 GNA11P29992 359 aa18.34■□□□□ 0.53
HDDC2-201ENST00000318787 TCF7P36402 384 aaPredicted RBP18.34■□□□□ 0.53
HDDC2-201ENST00000318787 EVCP57679 992 aa18.34■□□□□ 0.53
HDDC2-201ENST00000318787 CYP2W1Q8TAV3 490 aa18.34■□□□□ 0.53
HDDC2-201ENST00000318787 ZNF274Q96GC6 653 aaPredicted RBP18.34■□□□□ 0.53
HDDC2-201ENST00000318787 SENP7Q9BQF6 1050 aa18.34■□□□□ 0.53
HDDC2-201ENST00000318787 MXRA8Q9BRK3 442 aa18.34■□□□□ 0.53
HDDC2-201ENST00000318787 FTOQ9C0B1 505 aaKnown RBP eCLIP18.34■□□□□ 0.533e-7■■■□□ 17.7
HDDC2-201ENST00000318787 SLKQ9H2G2 1235 aaPredicted RBP18.34■□□□□ 0.53
HDDC2-201ENST00000318787 MTIF3Q9H2K0 278 aaKnown RBP18.34■□□□□ 0.53
HDDC2-201ENST00000318787 ZNF215Q9UL58 517 aaPredicted RBP18.34■□□□□ 0.53
HDDC2-201ENST00000318787 C17orf102A2RUQ5 167 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 DDX39AO00148 427 aaKnown RBP18.33■□□□□ 0.53
HDDC2-201ENST00000318787 HAS3O00219 553 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 ADAMTS3O15072 1205 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 DTNBO60941 627 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 SEC24BO95487 1268 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 HOXD8P13378 290 aaPredicted RBP18.33■□□□□ 0.53
HDDC2-201ENST00000318787 CLK2P49760 499 aaKnown RBP18.33■□□□□ 0.53
HDDC2-201ENST00000318787 NLRP5P59047 1200 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 ARHGAP4P98171 946 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 SESTD1Q86VW0 696 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 SDF4Q9BRK5 362 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 ZMYND12Q9H0C1 365 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 KCNH7Q9NS40 1196 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 COL6A3P12111 3177 aa18.33■□□□□ 0.53
HDDC2-201ENST00000318787 ESYT2A0FGR8 921 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 GRXCR1A8MXD5 290 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 EIF5BO60841 1220 aaKnown RBP18.32■□□□□ 0.52
HDDC2-201ENST00000318787 IQCF3P0C7M6 154 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 SMIM10L2AP0DMW4 78 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 SMIM10L2BP0DMW5 78 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 ARP10275 920 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 MARK3P27448 753 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 SREBF1P36956 1147 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 AK2P54819 239 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 ANAPC15P60006 121 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 FAM109BQ6ICB4 259 aaPredicted RBP18.32■□□□□ 0.52
HDDC2-201ENST00000318787 GLG1Q92896 1179 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 ATP6V0A1Q93050 837 aa18.32■□□□□ 0.52
HDDC2-201ENST00000318787 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.31■□□□□ 0.52
HDDC2-201ENST00000318787 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.31■□□□□ 0.52
HDDC2-201ENST00000318787 PITPNM1O00562 1244 aa18.31■□□□□ 0.52
HDDC2-201ENST00000318787 SMAD3P84022 425 aaKnown RBP18.31■□□□□ 0.52
HDDC2-201ENST00000318787 CEP55Q53EZ4 464 aa18.31■□□□□ 0.52
HDDC2-201ENST00000318787 LRRC8DQ7L1W4 858 aa18.31■□□□□ 0.52
HDDC2-201ENST00000318787 CAGE1Q8TC20 777 aa18.31■□□□□ 0.52
HDDC2-201ENST00000318787 BICD2Q8TD16 824 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms