RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 LRRN2O75325 713 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 PRR29P0C7W0 189 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 MB21D2Q8IYB1 491 aaPredicted RBP13.91□□□□□ -0.18
COL3A1-201ENST00000304636 ATP6V1G3Q96LB4 118 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 AMNQ9BXJ7 453 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 PICK1Q9NRD5 415 aa13.91□□□□□ -0.18
COL3A1-201ENST00000304636 POLE2P56282 527 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 ANKRD20A4Q4UJ75 823 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 ANKRD20A8PQ5CZ79 823 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 ANKRD20A2Q5SQ80 823 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 ANKRD20A1Q5TYW2 823 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 NBPF10Q6P3W6 841 aaKnown RBP13.9□□□□□ -0.18
COL3A1-201ENST00000304636 UNC13DQ70J99 1090 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 MAP7D3Q8IWC1 876 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 STRBPQ96SI9 672 aaKnown RBP13.9□□□□□ -0.18
COL3A1-201ENST00000304636 TSPYL2Q9H2G4 693 aaPredicted RBP13.9□□□□□ -0.18
COL3A1-201ENST00000304636 KAT6BQ8WYB5 2073 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 PRCPP42785 496 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 VSNL1P62760 191 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 CACNB1Q02641 598 aaPredicted RBP13.9□□□□□ -0.18
COL3A1-201ENST00000304636 SLFN13Q68D06 897 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 TTBK2Q6IQ55 1244 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 TSC22D3Q99576 134 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 MAD1L1Q9Y6D9 718 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 TNNC2P02585 160 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 MT-ND3P03897 115 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 GTF2IP78347 998 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 SEMA3FQ13275 785 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 TRIM50Q86XT4 487 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 PROM2Q8N271 834 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 CFAP74Q9C0B2 1584 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 A0A1W2PQC6 194 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 CLIC2O15247 247 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 PLA2G4BP0C869 781 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 PIK3CAP42336 1068 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 CDC37Q16543 378 aaPredicted RBP13.9□□□□□ -0.18
COL3A1-201ENST00000304636 SHC4Q6S5L8 630 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 PARP9Q8IXQ6 854 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 SAAL1Q96ER3 474 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 ACCSQ96QU6 501 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 PIGSQ96S52 555 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 PITPNM3Q9BZ71 974 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 TMEM206Q9H813 350 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 MRPL47Q9HD33 250 aaKnown RBP13.9□□□□□ -0.18
COL3A1-201ENST00000304636 NEO1Q92859 1461 aa13.9□□□□□ -0.18
COL3A1-201ENST00000304636 TRIM49BA6NDI0 452 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 LRRC53A6NM62 1247 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 H7C0C1 242 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 H7C1W4 665 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 ATP2B4P23634 1241 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 ATP5OP48047 213 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 ASPHQ12797 758 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 BEND6Q5SZJ8 279 aaPredicted RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 POMGNT1Q8WZA1 660 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 CERKLQ49MI3 558 aaPredicted RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 CALR3Q96L12 384 aaKnown RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 MTA3Q9BTC8 594 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 TRIM6Q9C030 488 aaPredicted RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 MLXIPQ9HAP2 919 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 PSD3Q9NYI0 1048 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 HDAC6Q9UBN7 1215 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 ESRRAP11474 423 aaPredicted RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 MAGOHP61326 146 aaKnown RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 DRP2Q13474 957 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 TAB3Q8N5C8 712 aaPredicted RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 UBE2TQ9NPD8 197 aaPredicted RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 THRAP3Q9Y2W1 955 aaKnown RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 TTC26A0AVF1 554 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 ZNF804BA4D1E1 1349 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 MIF4GDA9UHW6 222 aaKnown RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 TBC1D10CQ8IV04 446 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 CCDC24Q8N4L8 307 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 SYNGAP1Q96PV0 1343 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 PLEKHA8P1O95397 391 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 RWDD2BP57060 319 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 ICA1Q05084 483 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 GNPTABQ3T906 1256 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 NFRKBQ6P4R8 1299 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 ZNF449Q6P9G9 518 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 PDZD4Q76G19 769 aaPredicted RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 NSMCE1Q8WV22 266 aa13.89□□□□□ -0.19
COL3A1-201ENST00000304636 TAF1DQ9H5J8 278 aaPredicted RBP13.89□□□□□ -0.19
COL3A1-201ENST00000304636 KIF1CO43896 1103 aaKnown RBP13.88□□□□□ -0.19
COL3A1-201ENST00000304636 SH3BP5O60239 455 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 PDE1BQ01064 536 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 LRRC23Q53EV4 343 aaPredicted RBP13.88□□□□□ -0.19
COL3A1-201ENST00000304636 MCF2L2Q86YR7 1114 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 RFX6Q8HWS3 928 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 IFT122Q9HBG6 1241 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 FGFR1OP2Q9NVK5 253 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 EPS15L1Q9UBC2 864 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 MAP3K4Q9Y6R4 1608 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 ATP1A1P05023 1023 aaKnown RBP13.88□□□□□ -0.19
COL3A1-201ENST00000304636 CA4P22748 312 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 CASP1P29466 404 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 SCYL1Q96KG9 808 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 ADCY10Q96PN6 1610 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 PREX2Q70Z35 1606 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 IQGAP3Q86VI3 1631 aa13.88□□□□□ -0.19
COL3A1-201ENST00000304636 TESPA1A2RU30 521 aaPredicted RBP13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms