RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.12■□□□□ 0.33
CCDC88B-201ENST00000301897 APBB2Q92870 758 aa17.12■□□□□ 0.33
CCDC88B-201ENST00000301897 YME1L1Q96TA2 773 aa17.12■□□□□ 0.33
CCDC88B-201ENST00000301897 C17orf80Q9BSJ5 609 aa17.12■□□□□ 0.33
CCDC88B-201ENST00000301897 BAZ2BQ9UIF8 2168 aaKnown RBP17.12■□□□□ 0.33
CCDC88B-201ENST00000301897 COL4A6Q14031 1691 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 PPP1R11O60927 126 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 LGALS2P05162 132 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 SMIM10L2AP0DMW4 78 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 SMIM10L2BP0DMW5 78 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 HOXA13P31271 388 aaPredicted RBP17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 SP2Q02086 613 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 NEDD9Q14511 834 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 SEC23AQ15436 765 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 EPC2Q52LR7 807 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 B4GALNT3Q6L9W6 998 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 GJD3Q8N144 294 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 TOP1MTQ969P6 601 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 RIOX1Q9H6W3 641 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 KAT6AQ92794 2004 aa17.11■□□□□ 0.33
CCDC88B-201ENST00000301897 ERICH2A1L162 156 aa17.1■□□□□ 0.33
CCDC88B-201ENST00000301897 ALADP13716 330 aa17.1■□□□□ 0.33
CCDC88B-201ENST00000301897 HIC1Q14526 733 aa17.1■□□□□ 0.33
CCDC88B-201ENST00000301897 PTCRAQ6ISU1 281 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-201ENST00000301897 METTL7BQ6UX53 244 aa17.1■□□□□ 0.33
CCDC88B-201ENST00000301897 IL31RAQ8NI17 732 aa17.1■□□□□ 0.33
CCDC88B-201ENST00000301897 ZNF215Q9UL58 517 aaPredicted RBP17.1■□□□□ 0.33
CCDC88B-201ENST00000301897 PNMA6FA0A0J9YX94 578 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 PRR33A8MZF0 331 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 H3BNC9 293 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 TREHO43280 583 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 NCK2O43639 380 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 SORBS3O60504 671 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 SSTR3P32745 418 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 ICAM3P32942 547 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 GRM4Q14833 912 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 SART3Q15020 963 aaKnown RBP17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 FCHSD1Q86WN1 690 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 HOMER1Q86YM7 354 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 KHSRPQ92945 711 aaKnown RBP eCLIP17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 INPP4AQ96PE3 977 aaPredicted RBP17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 RNPEPQ9H4A4 650 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 C11orf16Q9NQ32 467 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 FRMPD4Q14CM0 1322 aa17.09■□□□□ 0.33
CCDC88B-201ENST00000301897 MYO7AQ13402 2215 aa17.08■□□□□ 0.33
CCDC88B-201ENST00000301897 RALGAPA2Q2PPJ7 1873 aa17.08■□□□□ 0.33
CCDC88B-201ENST00000301897 NLRC5Q86WI3 1866 aa17.08■□□□□ 0.33
CCDC88B-201ENST00000301897 GRXCR2A6NFK2 248 aa17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 FIBPO43427 364 aa17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 GPM6BQ13491 265 aa17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 XRRA1Q6P2D8 792 aa17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 TMEM192Q8IY95 271 aa17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 BANK1Q8NDB2 785 aa17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 NEK9Q8TD19 979 aa17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 PABPC5Q96DU9 382 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 IFIH1Q9BYX4 1025 aaKnown RBP17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 CD320Q9NPF0 282 aa17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 RWDD3Q9Y3V2 267 aa17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 U3KPZ7 1027 aaPredicted RBP17.08■□□□□ 0.32
CCDC88B-201ENST00000301897 SPATA31C2B4DYI2 1134 aa17.07■□□□□ 0.32
CCDC88B-201ENST00000301897 FAM26DQ5JW98 314 aa17.07■□□□□ 0.32
CCDC88B-201ENST00000301897 CYB5R4Q7L1T6 521 aa17.07■□□□□ 0.32
CCDC88B-201ENST00000301897 GIMAP8Q8ND71 665 aaPredicted RBP17.07■□□□□ 0.32
CCDC88B-201ENST00000301897 GPKOWQ92917 476 aaPredicted RBP eCLIP17.07■□□□□ 0.32
CCDC88B-201ENST00000301897 PIGSQ96S52 555 aa17.07■□□□□ 0.32
CCDC88B-201ENST00000301897 SENP7Q9BQF6 1050 aa17.07■□□□□ 0.32
CCDC88B-201ENST00000301897 NSUN3Q9H649 340 aaKnown RBP17.07■□□□□ 0.32
CCDC88B-201ENST00000301897 PRKAG3Q9UGI9 489 aa17.07■□□□□ 0.32
CCDC88B-201ENST00000301897 NRCAMQ92823 1304 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 FAM86C2PA6NEL3 165 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 IFIT3O14879 490 aaKnown RBP17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 UPP2O95045 317 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 RB1P06400 928 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 CTSHP09668 335 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 COL19A1Q14993 1142 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 CYFIP1Q7L576 1253 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 RUFY2Q8WXA3 655 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 CUL5Q93034 780 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 IL17RAQ96F46 866 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 GPR20Q99678 358 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 LMAN2LQ9H0V9 348 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 SETD4Q9NVD3 440 aa17.06■□□□□ 0.32
CCDC88B-201ENST00000301897 LOC101059915A0A1B0GWI6 518 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 IL9P15248 144 aa17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 MRPS9P82933 396 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 WTAPQ15007 396 aa17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 CSPP1Q1MSJ5 1256 aa17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 TAF2Q6P1X5 1199 aa17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 CATIPQ7Z7H3 387 aa17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 RALYLQ86SE5 291 aaKnown RBP17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 RPAINQ86UA6 219 aa17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 RSPH3Q86UC2 560 aa17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 FIBCD1Q8N539 461 aa17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 C11orf84Q9BUA3 381 aaPredicted RBP17.05■□□□□ 0.32
CCDC88B-201ENST00000301897 IGHDP01880 384 aa17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 RPLP2P05387 115 aaKnown RBP17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 ADAM17P78536 824 aa17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 ARHGAP4P98171 946 aa17.04■□□□□ 0.32
CCDC88B-201ENST00000301897 TROAPQ12815 778 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms