RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 BIN1O00499 593 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 BIRC5O15392 142 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 PCP11498 1178 aaKnown RBP5.21□□□□□ -1.57
CSMD3-201ENST00000297405 HNRNPH2P55795 449 aaKnown RBP5.21□□□□□ -1.57
CSMD3-201ENST00000297405 CCDC36Q8IYA8 594 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 RNASE11Q8TAA1 199 aaKnown RBP5.21□□□□□ -1.57
CSMD3-201ENST00000297405 KRT84Q9NSB2 600 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 RABGEF1Q9UJ41 708 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 DICER1Q9UPY3 1922 aaKnown RBP5.21□□□□□ -1.57
CSMD3-201ENST00000297405 SNTNA6NMZ2 147 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 GNGT2O14610 69 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 TOMM70O94826 608 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 ATP8B2P98198 1209 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 DHX32Q7L7V1 743 aaKnown RBP5.21□□□□□ -1.57
CSMD3-201ENST00000297405 RTL3Q8N8U3 475 aaKnown RBP5.21□□□□□ -1.57
CSMD3-201ENST00000297405 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.21□□□□□ -1.57
CSMD3-201ENST00000297405 APBB2Q92870 758 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 KCNH3Q9ULD8 1083 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 TMCO1Q9UM00 188 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 SPG7Q9UQ90 795 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 SYNMO15061 1565 aa5.21□□□□□ -1.57
CSMD3-201ENST00000297405 ARFGEF3Q5TH69 2177 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 CLASP1Q7Z460 1538 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 SNF8Q96H20 258 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 KDM4CQ9H3R0 1056 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 FKBP14Q9NWM8 211 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 MCM9Q9NXL9 1143 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 AATFQ9NY61 560 aaKnown RBP eCLIP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 ANO9A1A5B4 782 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 XRCC5P13010 732 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 IL10P22301 178 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 POSTNQ15063 836 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 ARMC3Q5W041 872 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 RINT1Q6NUQ1 792 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 PARVGQ9HBI0 331 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 MAP3K20Q9NYL2 800 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 LDHCP07864 332 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 BFSP1Q12934 665 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 NR5A1Q13285 461 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 ARMCX4Q5H9R4 360 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 CDH24Q86UP0 819 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 PBXIP1Q96AQ6 731 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 CLMNQ96JQ2 1002 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 ESYT1Q9BSJ8 1104 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 TRAF3IP3Q9Y228 551 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 FER1L6Q2WGJ9 1857 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 NPC1L1Q9UHC9 1359 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 NVLO15381 856 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 VIL1P09327 827 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 IFIT1P09914 478 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 NFKBIAP25963 317 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 PPARGP37231 505 aaPredicted RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 IGHMBP2P38935 993 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 USP26Q9BXU7 913 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 USP16Q9Y5T5 823 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 CACNA1EQ15878 2313 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 A0A1W2PQ27 194 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 A0A1W2PQ64 194 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 A0A1W2PQD8 194 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 EVPLLA8MZ36 301 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 WDR47O94967 919 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 RBM5P52756 815 aaKnown RBP eCLIP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 CRELD2Q6UXH1 353 aaPredicted RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 TMC5Q6UXY8 1006 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 KRT73Q86Y46 540 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 USHBP1Q8N6Y0 703 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 PPP1R2P1Q96PQ5 205 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 GOLPH3LQ9H4A5 285 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 CACNA2D2Q9NY47 1150 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 ADGRL1O94910 1474 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 TBC1D12O60347 775 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 NLRP11P59045 1033 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 TDRD7Q8NHU6 1098 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 DHX38Q92620 1227 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 TMEM87BQ96K49 555 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 PPLO60437 1756 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 MAGEA13PA6NCF6 341 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 DNM1Q05193 864 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 AOC3Q16853 763 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 SV2BQ7L1I2 683 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 CEP95Q96GE4 821 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 ALG1Q9BT22 464 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 MMADHCQ9H3L0 296 aaPredicted RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 APOBEC2Q9Y235 224 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 EPN1Q9Y6I3 576 aaPredicted RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 ATG2BQ96BY7 2078 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 SMAPO00193 183 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 AHCYL1O43865 530 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 SASH1O94885 1247 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 CYP2C19P33261 490 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 DAB2P98082 770 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 MCMDC2Q4G0Z9 681 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 CADPS2Q86UW7 1296 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 B3GALT6Q96L58 329 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 VPS16Q9H269 839 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 RPL26L1Q9UNX3 145 aaKnown RBP5.21□□□□□ -1.58
CSMD3-201ENST00000297405 PPP2R2CQ9Y2T4 447 aa5.21□□□□□ -1.58
CSMD3-201ENST00000297405 C9orf84Q5VXU9 1444 aa5.2□□□□□ -1.58
CSMD3-201ENST00000297405 SYNJ2O15056 1496 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms