RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 HDLBPQ00341 1268 aaKnown RBP20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 APBA1Q02410 837 aa20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 SPA17Q15506 151 aa20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 CCDC84Q86UT8 332 aaPredicted RBP20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 CATSPER3Q86XQ3 398 aa20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 ETNPPLQ8TBG4 499 aa20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 MMS19Q96T76 1030 aa20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 DEF6Q9H4E7 631 aa20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 NLRC4Q9NPP4 1024 aa20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 PCDHA2Q9Y5H9 948 aa20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 SAR1BQ9Y6B6 198 aa20.33■□□□□ 0.85
SHKBP1-201ENST00000291842 SPDYE3A6NKU9 549 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 VSNL1P62760 191 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 KCNMA1Q12791 1236 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 KIF5AQ12840 1032 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 PABPC4Q13310 644 aaKnown RBP eCLIP20.32■□□□□ 0.841e-9■■■■□ 22.8
SHKBP1-201ENST00000291842 BRD3Q15059 726 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 RBM26Q5T8P6 1007 aaKnown RBP20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 SLC30A10Q6XR72 485 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 MSANTD4Q8NCY6 345 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 CRYGNQ8WXF5 182 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 CRACR2AQ9BSW2 395 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 TCP10L2B9ZVM9 353 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 ZNF185O15231 689 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 BMP3P12645 472 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 ECE1P42892 770 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 KIF11P52732 1056 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 VAV2P52735 878 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 CDK17Q00537 523 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 SPIRE1Q08AE8 756 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 STYK1Q6J9G0 422 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 SCFD1Q8WVM8 642 aa20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 IFIH1Q9BYX4 1025 aaKnown RBP20.32■□□□□ 0.84
SHKBP1-201ENST00000291842 YDJCA8MPS7 323 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 SLC12A3P55017 1021 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 FKBP1AP62942 108 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 CYP4A11Q02928 519 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 AP3B2Q13367 1082 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 CACNA2D4Q7Z3S7 1137 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 SLFN12Q8IYM2 578 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 GMCL1P1Q8NEA9 526 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 NEK11Q8NG66 645 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 BAP1Q92560 729 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 LENG9Q96B70 501 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 DRC1Q96MC2 740 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 MBOAT7Q96N66 472 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 MLXIPQ9HAP2 919 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 ABCB6Q9NP58 842 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 EMILIN3Q9NT22 766 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 SMCHD1A6NHR9 2005 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 CLRN2A0PK11 232 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 OPLAHO14841 1288 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 ATP8B1O43520 1251 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 AKR1B10O60218 316 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 HMGB2P26583 209 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 HNRNPH3P31942 346 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 CASP5P51878 434 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 SMC1AQ14683 1233 aaKnown RBP20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 GMCL1Q96IK5 515 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 RAB21Q9UL25 225 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 PCDHA13Q9Y5I0 950 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 ABCB11O95342 1321 aa20.31■□□□□ 0.84
SHKBP1-201ENST00000291842 BEND6Q5SZJ8 279 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 PAPD7Q5XG87 772 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 SAMD1Q6SPF0 538 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 ZNF662Q6ZS27 426 aa20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 EHBP1Q8NDI1 1231 aa20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 SECISBP2LQ93073 1101 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 JADE2Q9NQC1 790 aa20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 PPIP5K2O43314 1243 aa20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 OAS2P29728 719 aaKnown RBP20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 KIAA1755Q5JYT7 1200 aa20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 ANKRD13CQ8N6S4 541 aa20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 BCAS3Q9H6U6 928 aa20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 CAPN6Q9Y6Q1 641 aa20.3■□□□□ 0.84
SHKBP1-201ENST00000291842 C21orf2O43822 256 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 SPATA31C1P0DKV0 1188 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 PURBQ96QR8 312 aaKnown RBP20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 KCTD10Q9H3F6 313 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 PRR12Q9ULL5 1215 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 POTEB2H3BUK9 544 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 MSH4O15457 936 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 MOCS3O95396 460 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 GFPT1Q06210 699 aaPredicted RBP20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 HAUS3Q68CZ6 603 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 ACER1Q8TDN7 264 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 TBC1D5Q92609 795 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 IQCDQ96DY2 449 aa20.29■□□□□ 0.84
SHKBP1-201ENST00000291842 ZNF76P36508 570 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 SREBF1P36956 1147 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 ADAM9Q13443 819 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 Q4G0T1 1027 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 CC2D2BQ6DHV5 1058 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 PDXDC1Q6P996 788 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 C7orf43Q8WVR3 580 aa20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 ZFP91Q96JP5 570 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 LSM14BQ9BX40 385 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-201ENST00000291842 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms