RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZNF148Q9UQR1 794 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 ANXA13P27216 316 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 CDC25AP30304 524 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 PSMD6Q15008 389 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 NDUFAF2Q8N183 169 aa20.75■□□□□ 0.91
UPF1-201ENST00000262803 SRPRBQ9Y5M8 271 aaKnown RBP20.75■□□□□ 0.91
UPF1-201ENST00000262803 MAN2A1Q16706 1144 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 BZW1Q7L1Q6 419 aaKnown RBP20.74■□□□□ 0.91
UPF1-201ENST00000262803 SH3GLB2Q9NR46 395 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 TTI1O43156 1089 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 DALRD3Q5D0E6 543 aaKnown RBP20.74■□□□□ 0.91
UPF1-201ENST00000262803 FAM186BQ8IYM0 893 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 PCDHB6Q9Y5E3 794 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 SESTD1Q86VW0 696 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 SEPT10Q9P0V9 454 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 GRAPQ13588 217 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 RC3H1Q5TC82 1133 aaKnown RBP20.74■□□□□ 0.91
UPF1-201ENST00000262803 RFX6Q8HWS3 928 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 GRAPLQ8TC17 118 aaPredicted RBP20.74■□□□□ 0.91
UPF1-201ENST00000262803 AP3B2Q13367 1082 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 LRRC41Q15345 812 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 TBCKQ8TEA7 893 aa20.74■□□□□ 0.91
UPF1-201ENST00000262803 STMN1P16949 149 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 ACRBPQ8NEB7 543 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 MGEA5O60502 916 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 GNAT1P11488 350 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 FKBP3Q00688 224 aaKnown RBP20.73■□□□□ 0.91
UPF1-201ENST00000262803 CIAPIN1Q6FI81 312 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.73■□□□□ 0.91
UPF1-201ENST00000262803 HEG1Q9ULI3 1381 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 ZNF189O75820 626 aaPredicted RBP20.73■□□□□ 0.91
UPF1-201ENST00000262803 LDHAP00338 332 aaKnown RBP20.73■□□□□ 0.91
UPF1-201ENST00000262803 DCAF4Q8WV16 495 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 USP17L3A6NCW0 530 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 USP17L4A6NCW7 530 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 SOWAHDA6NJG2 315 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 WDR64B1ANS9 1081 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 PRPF3O43395 683 aaKnown RBP20.73■□□□□ 0.91
UPF1-201ENST00000262803 COPB2P35606 906 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 JAK3P52333 1124 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 USP17L1Q7RTZ2 530 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 INO80BQ9C086 356 aaPredicted RBP20.73■□□□□ 0.91
UPF1-201ENST00000262803 RWDD2AQ9UIY3 292 aa20.73■□□□□ 0.91
UPF1-201ENST00000262803 PLA2R1Q13018 1463 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 CIITAP33076 1130 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 ECE1P42892 770 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 STX1BP61266 288 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 IGBP1P78318 339 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 ANGPTL3Q9Y5C1 460 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 TTC4O95801 387 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 KCTD16Q68DU8 428 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 INHBAP08476 426 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 ATP1A3P13637 1013 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 SLC38A10Q9HBR0 1119 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 STK38LQ9Y2H1 464 aa20.72■□□□□ 0.91
UPF1-201ENST00000262803 PIH1D3Q9NQM4 214 aaKnown RBP20.72■□□□□ 0.91
UPF1-201ENST00000262803 INO80B-WBP1J3KQ70 363 aa20.71■□□□□ 0.91
UPF1-201ENST00000262803 MCF2LO15068 1137 aa20.71■□□□□ 0.91
UPF1-201ENST00000262803 GPC4O75487 556 aa20.71■□□□□ 0.91
UPF1-201ENST00000262803 KIAA1841Q6NSI8 718 aa20.71■□□□□ 0.91
UPF1-201ENST00000262803 ZMYND10O75800 440 aa20.71■□□□□ 0.91
UPF1-201ENST00000262803 ORC2Q13416 577 aaPredicted RBP20.71■□□□□ 0.91
UPF1-201ENST00000262803 JADE1Q6IE81 842 aa20.71■□□□□ 0.91
UPF1-201ENST00000262803 CEP170P1Q96L14 293 aa20.71■□□□□ 0.91
UPF1-201ENST00000262803 NXNQ6DKJ4 435 aa20.71■□□□□ 0.91
UPF1-201ENST00000262803 MASTLQ96GX5 879 aa20.71■□□□□ 0.91
UPF1-201ENST00000262803 LIG3P49916 1009 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 IL9RQ01113 521 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 ARL13BQ3SXY8 428 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 HDAC11Q96DB2 347 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 PGBD1Q96JS3 809 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 PIGSQ96S52 555 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 CAPN12Q6ZSI9 719 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 SPTLC3Q9NUV7 552 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 TNFAIP2Q03169 654 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 TOB2Q14106 344 aaPredicted RBP20.7■□□□□ 0.9
UPF1-201ENST00000262803 ARL6IP4Q66PJ3 421 aaKnown RBP20.7■□□□□ 0.9
UPF1-201ENST00000262803 LRRC8CQ8TDW0 803 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 PBKQ96KB5 322 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 LRRC4Q9HBW1 653 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 KIF1BO60333 1816 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 CCNE1P24864 410 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 RASGRF1Q13972 1273 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 THAP9Q9H5L6 903 aa20.7■□□□□ 0.9
UPF1-201ENST00000262803 CYP2D7A0A087X1C5 515 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 CCDC151A5D8V7 595 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 MAPK4P31152 587 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 CACNB1Q02641 598 aaPredicted RBP20.69■□□□□ 0.9
UPF1-201ENST00000262803 MESDQ14696 234 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 TMEM179Q6ZVK1 233 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 PAGE5Q96GU1 130 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 BSDC1Q9NW68 430 aaPredicted RBP20.69■□□□□ 0.9
UPF1-201ENST00000262803 H7C1W4 665 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 ZBED6P86452 979 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 PPP1R18Q6NYC8 613 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 TUBB6Q9BUF5 446 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 KIAA1586Q9HCI6 787 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 TTC36A6NLP5 189 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 EPHB4P54760 987 aa20.69■□□□□ 0.9
UPF1-201ENST00000262803 TTC25Q96NG3 672 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms