RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 DNAJC24Q6P3W2 148 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 APOBEC3FQ8IUX4 373 aaKnown RBP20.56■□□□□ 0.88
SMPD3-201ENST00000219334 ANKRD13CQ8N6S4 541 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 GIMAP8Q8ND71 665 aaPredicted RBP20.56■□□□□ 0.88
SMPD3-201ENST00000219334 FAM167AQ96KS9 214 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 SLITRK6Q9H5Y7 841 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 MRPL47Q9HD33 250 aaKnown RBP20.56■□□□□ 0.88
SMPD3-201ENST00000219334 WDR64B1ANS9 1081 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 PCK1P35558 622 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 LIFRP42702 1097 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 RASSF2P50749 326 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 HLFQ16534 295 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 TTC31Q49AM3 519 aaPredicted RBP20.56■□□□□ 0.88
SMPD3-201ENST00000219334 JAK3P52333 1124 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 RASSF7Q02833 373 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 GDAP1L1Q96MZ0 367 aa20.56■□□□□ 0.88
SMPD3-201ENST00000219334 LRRN2O75325 713 aa20.55■□□□□ 0.88
SMPD3-201ENST00000219334 EHHADHQ08426 723 aa20.55■□□□□ 0.88
SMPD3-201ENST00000219334 AP3B2Q13367 1082 aa20.55■□□□□ 0.88
SMPD3-201ENST00000219334 SYNE4Q8N205 404 aa20.55■□□□□ 0.88
SMPD3-201ENST00000219334 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.55■□□□□ 0.88
SMPD3-201ENST00000219334 UBN2Q6ZU65 1347 aa20.55■□□□□ 0.88
SMPD3-201ENST00000219334 NOP9Q86U38 636 aaKnown RBP20.55■□□□□ 0.88
SMPD3-201ENST00000219334 MSTO1Q9BUK6 570 aa20.55■□□□□ 0.88
SMPD3-201ENST00000219334 CLASP1Q7Z460 1538 aa20.55■□□□□ 0.88
SMPD3-201ENST00000219334 ACTN1P12814 892 aa20.55■□□□□ 0.88
SMPD3-201ENST00000219334 KIF23Q02241 960 aaPredicted RBP20.55■□□□□ 0.88
SMPD3-201ENST00000219334 NR5A1Q13285 461 aa20.55■□□□□ 0.88
SMPD3-201ENST00000219334 SLFN14P0C7P3 912 aa20.55■□□□□ 0.88
SMPD3-201ENST00000219334 ZNF658Q5TYW1 1059 aaPredicted RBP20.55■□□□□ 0.88
SMPD3-201ENST00000219334 CYP27B1O15528 508 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 HOXA7P31268 230 aaPredicted RBP20.54■□□□□ 0.88
SMPD3-201ENST00000219334 NCAPGQ9BPX3 1015 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 RABEP2Q9H5N1 569 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 MYO5CQ9NQX4 1742 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 PSMD2Q13200 908 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 C1orf228Q6PIY5 440 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 SH3RF3Q8TEJ3 882 aaPredicted RBP20.54■□□□□ 0.88
SMPD3-201ENST00000219334 HEXIM2Q96MH2 286 aaKnown RBP20.54■□□□□ 0.88
SMPD3-201ENST00000219334 CD209Q9NNX6 404 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 BAG5Q9UL15 447 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 ERVK-7P63135 1459 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 KRT3P12035 628 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 SNAP25P60880 206 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 NAA35Q5VZE5 725 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 DDIT3P35638 169 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 RAB44Q7Z6P3 723 aaPredicted RBP20.54■□□□□ 0.88
SMPD3-201ENST00000219334 RMDN3Q96TC7 470 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 FEM1BQ9UK73 627 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 CD58P19256 250 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 INPP5BP32019 993 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 DNAAF3Q8N9W5 541 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 MRFAP1L1Q96HT8 127 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 UBN1Q9NPG3 1134 aa20.54■□□□□ 0.88
SMPD3-201ENST00000219334 MCF2LO15068 1137 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 FAM83BQ5T0W9 1011 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.53■□□□□ 0.88
SMPD3-201ENST00000219334 CHMP6Q96FZ7 201 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 GPC4O75487 556 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 INHBAP08476 426 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 EPHB1P54762 984 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 CTTNQ14247 550 aaKnown RBP20.53■□□□□ 0.88
SMPD3-201ENST00000219334 MAP3K21Q5TCX8 1036 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 LMNTD2Q8IXW0 634 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 UBE2TQ9NPD8 197 aaPredicted RBP20.53■□□□□ 0.88
SMPD3-201ENST00000219334 KLHL14Q9P2G3 628 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 COL15A1P39059 1388 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 SH2D4BQ5SQS7 431 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 RAPH1Q70E73 1250 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 PNMA8AQ86V59 439 aaPredicted RBP20.53■□□□□ 0.88
SMPD3-201ENST00000219334 ATP6V1E2Q96A05 226 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 MAGOHBQ96A72 148 aaKnown RBP20.53■□□□□ 0.88
SMPD3-201ENST00000219334 MINPP1Q9UNW1 487 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 SF3A3Q12874 501 aaKnown RBP eCLIP20.53■□□□□ 0.88
SMPD3-201ENST00000219334 JADE1Q6IE81 842 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 MYLK4Q86YV6 388 aaPredicted RBP20.53■□□□□ 0.88
SMPD3-201ENST00000219334 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.53■□□□□ 0.88
SMPD3-201ENST00000219334 GANCQ8TET4 914 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 POLIQ9UNA4 740 aa20.53■□□□□ 0.88
SMPD3-201ENST00000219334 ADGRL3Q9HAR2 1447 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 USP17L10C9JJH3 530 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 LDHAP00338 332 aaKnown RBP20.52■□□□□ 0.88
SMPD3-201ENST00000219334 SLC4A1P02730 911 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 NFKBIAP25963 317 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 ARHGAP25P42331 645 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 BRD3Q15059 726 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 PHLDB2Q86SQ0 1253 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 MCUQ8NE86 351 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 CASP14P31944 242 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 SNRNP48Q6IEG0 339 aaKnown RBP20.52■□□□□ 0.88
SMPD3-201ENST00000219334 POTEDQ86YR6 584 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 SMYD2Q9NRG4 433 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 GCNT4Q9P109 453 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 COBLO75128 1261 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 TSNAXIP1Q2TAA8 658 aa20.52■□□□□ 0.88
SMPD3-201ENST00000219334 TOPORSQ9NS56 1045 aaPredicted RBP20.52■□□□□ 0.88
SMPD3-201ENST00000219334 IQCA1LA6NCM1 817 aa20.52■□□□□ 0.87
SMPD3-201ENST00000219334 SPDYE2BA6NHP3 402 aa20.52■□□□□ 0.87
SMPD3-201ENST00000219334 SPDYE6P0CI01 402 aa20.52■□□□□ 0.87
SMPD3-201ENST00000219334 CIITAP33076 1130 aa20.52■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms