RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	COR1	P07256	457 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	PMR1	P13586	950 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	KRE2	P27809	442 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	SPR1	P32603	445 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	UBC11	P52492	156 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	CTS2	Q06350	511 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	DCP1	Q12517	231 aa	Predicted RBP	4.16	□□□□□ -1.74
CDC9	YDL164C	SPO24	Q3E752	67 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	MMS22	Q06164	1454 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	SIR3	P06701	978 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	SPE2	P21182	396 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	RHB1	P25378	209 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	PRP21	P32524	280 aa	Predicted RBP	4.16	□□□□□ -1.74
CDC9	YDL164C	MTR2	P34232	184 aa	Known RBP	4.16	□□□□□ -1.74
CDC9	YDL164C	BNA4	P38169	460 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	MMS21	P38632	267 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	RCY1	P39531	840 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	ATM1	P40416	690 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	FAR3	P46671	204 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	UBX6	P47049	396 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	MRPL22	P53881	309 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	COX20	Q04935	205 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	RNH203	Q12338	110 aa		4.16	□□□□□ -1.74
CDC9	YDL164C	CHO2	P05374	869 aa	Known RBP	4.15	□□□□□ -1.74
CDC9	YDL164C	MATALPHA1	P0CY06	175 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	HMLALPHA1	P0CY07	175 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	SAM1	P10659	382 aa	Known RBP	4.15	□□□□□ -1.74
CDC9	YDL164C	MET16	P18408	261 aa	Predicted RBP	4.15	□□□□□ -1.74
CDC9	YDL164C	ATP10	P18496	279 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	RPI1	P23250	407 aa	Known RBP	4.15	□□□□□ -1.74
CDC9	YDL164C	CYM1	P32898	989 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	ARA1	P38115	344 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	RTT107	P38850	1070 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	PET100	P38958	111 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	ALP1	P38971	573 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	PRM9	P39551	298 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	ASN2	P49090	572 aa	Known RBP	4.15	□□□□□ -1.74
CDC9	YDL164C	YIP4	P53093	235 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	YPR003C	P53394	754 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	YMR087W	Q04299	284 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	YML053C	Q04978	212 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	NRT1	Q08485	598 aa		4.15	□□□□□ -1.74
CDC9	YDL164C	SLK19	Q08581	821 aa	Known RBP	4.15	□□□□□ -1.74
CDC9	YDL164C	SCEI	P03882	235 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	GPA1	P08539	472 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	PRP16	P15938	1071 aa	Predicted RBP	4.15	□□□□□ -1.75
CDC9	YDL164C	YCP4	P25349	247 aa	Known RBP	4.15	□□□□□ -1.75
CDC9	YDL164C	GID7	P25569	745 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	YKL097C	P34245	136 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	BMH2	P34730	273 aa	Known RBP	4.15	□□□□□ -1.75
CDC9	YDL164C	SLM1	P40485	686 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	SYG1	P40528	902 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	STE24	P47154	453 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	EFM5	P53200	248 aa	Known RBP	4.15	□□□□□ -1.75
CDC9	YDL164C	DIP5	P53388	608 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	EAF7	P53911	425 aa	Known RBP	4.15	□□□□□ -1.75
CDC9	YDL164C	YDR541C	Q03049	344 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	HRD3	Q05787	833 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	TLG2	Q08144	397 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	IRC13	Q08630	104 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	APC2	Q12440	853 aa		4.15	□□□□□ -1.75
CDC9	YDL164C	CDC15	P27636	974 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	LAC1	P28496	418 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	ZUO1	P32527	433 aa	Known RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	ECT1	P33412	323 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	SOR1	P35497	357 aa	Known RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	TCM62	P38228	572 aa	Known RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	TOM71	P38825	639 aa	Known RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	END3	P39013	349 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	PHM8	P40025	321 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	MYO5	Q04439	1219 aa	Known RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	APC4	Q04601	652 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	SOR2	Q07786	357 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	LEA1	Q08963	238 aa	Predicted RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	YOR029W	Q12243	111 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	RNR2	P09938	399 aa	Known RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	FRS2	P15625	503 aa	Known RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	FUB1	P25659	250 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	GAC1	P28006	793 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	ITR1	P30605	584 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	UBA4	P38820	440 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	YPS6	P40583	537 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	PRY1	P47032	299 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	EMC2	P47133	292 aa	Known RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	PYK2	P52489	506 aa	Known RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	YGL114W	P53134	725 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	VOA1	P53262	265 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	ORC3	P54790	616 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	RLI1	Q03195	608 aa	Known RBP	4.14	□□□□□ -1.75
CDC9	YDL164C	YDR262W	Q12331	272 aa		4.14	□□□□□ -1.75
CDC9	YDL164C	CHS1	P08004	1131 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	RPL18A	P0CX49	186 aa	Known RBP	4.13	□□□□□ -1.75
CDC9	YDL164C	RPL18B	P0CX50	186 aa	Known RBP	4.13	□□□□□ -1.75
CDC9	YDL164C	STE11	P23561	717 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	RAD14	P28519	371 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	YKL162C	P36052	402 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	RPL32	P38061	130 aa	Known RBP	4.13	□□□□□ -1.75
CDC9	YDL164C	YPK3	P38070	525 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	YHR182W	P38870	785 aa		4.13	□□□□□ -1.75
CDC9	YDL164C	RIX1	P38883	763 aa	Predicted RBP	4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 14.6 ms