RNA–Protein interactions for RNA: ENST00000628857.1

CNOT1-223, Transcript of CCR4-NOT transcription complex subunit 1, human

TSL 5 BASIC

Gene CNOT1, Length 291 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT1-223	ENST00000628857	TMEFF1	Q8IYR6	380 aa		4.6	□□□□□ -1.67
CNOT1-223	ENST00000628857	LILRB2	Q8N423	598 aa		4.6	□□□□□ -1.67
CNOT1-223	ENST00000628857	GSTCD	Q8NEC7	633 aa		4.6	□□□□□ -1.67
CNOT1-223	ENST00000628857	TTLL11	Q8NHH1	800 aa		4.6	□□□□□ -1.67
CNOT1-223	ENST00000628857	PANK1	Q8TE04	598 aa		4.6	□□□□□ -1.67
CNOT1-223	ENST00000628857	DACT3	Q96B18	629 aa	Predicted RBP	4.6	□□□□□ -1.67
CNOT1-223	ENST00000628857	CHAMP1	Q96JM3	812 aa		4.6	□□□□□ -1.67
CNOT1-223	ENST00000628857	ALG1	Q9BT22	464 aa		4.6	□□□□□ -1.67
CNOT1-223	ENST00000628857	ZSWIM4	Q9H7M6	989 aa		4.6	□□□□□ -1.67
CNOT1-223	ENST00000628857	FBXL7	Q9UJT9	491 aa		4.6	□□□□□ -1.67
CNOT1-223	ENST00000628857	ARVCF	O00192	962 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	GRK2	P25098	689 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	PML	P29590	882 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	GRK3	P35626	688 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	EPHB3	P54753	998 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	HTRA3	P83110	453 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	FOXO4	P98177	505 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	PAK1	Q13153	545 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	FZD5	Q13467	585 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	ETV3L	Q6ZN32	361 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	MILR1	Q7Z6M3	343 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	FAM126B	Q8IXS8	530 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	LRRC56	Q8IYG6	542 aa	Predicted RBP	4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	LINC00482	Q8N8I6	264 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	BTG4	Q9NY30	223 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	PALD1	Q9ULE6	856 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	HCFC2	Q9Y5Z7	792 aa		4.59	□□□□□ -1.67
CNOT1-223	ENST00000628857	ASXL2	Q76L83	1435 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	TCRBV5S2	A0A599	114 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	PLD2	O14939	933 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	RFPL3	O75679	317 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	SOD2	P04179	222 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	ATF2	P15336	505 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	EPHA5	P54756	1037 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	BMS1	Q14692	1282 aa	Known RBP	4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	FNDC3B	Q53EP0	1204 aa	Known RBP	4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	TCERG1L	Q5VWI1	586 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	CNKSR3	Q6P9H4	555 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	C16orf59	Q7L2K0	433 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	NOP9	Q86U38	636 aa	Known RBP	4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	ZC3H18	Q86VM9	953 aa	Known RBP	4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	UHMK1	Q8TAS1	419 aa	Known RBP	4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	TMEM260	Q9NX78	707 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	FAN1	Q9Y2M0	1017 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	PTCH2	Q9Y6C5	1203 aa		4.58	□□□□□ -1.68
CNOT1-223	ENST00000628857	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	4.57	□□□□□ -1.68
CNOT1-223	ENST00000628857	NUAK1	O60285	661 aa		4.57	□□□□□ -1.68
CNOT1-223	ENST00000628857	SSPN	Q14714	243 aa		4.57	□□□□□ -1.68
CNOT1-223	ENST00000628857	NLGN4X	Q8N0W4	816 aa		4.57	□□□□□ -1.68
CNOT1-223	ENST00000628857	ASH2L	Q9UBL3	628 aa		4.57	□□□□□ -1.68
CNOT1-223	ENST00000628857	RAPGEFL1	Q9UHV5	662 aa		4.57	□□□□□ -1.68
CNOT1-223	ENST00000628857	PCDHB4	Q9Y5E5	795 aa		4.57	□□□□□ -1.68
CNOT1-223	ENST00000628857	BLACE	A4D250	179 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	SH3D21	A4FU49	640 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	CYP2C8	P10632	490 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	PI3	P19957	117 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	NKX3-2	P78367	333 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	LACTB	P83111	547 aa	Predicted RBP	4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	GUCY1A3	Q02108	690 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	LCE3B	Q5TA77	95 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	SAPCD2	Q86UD0	394 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	LINC01356	Q8N9X3	169 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	PCDH19	Q8TAB3	1148 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	FNIP1	Q8TF40	1166 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	FBXW5	Q969U6	566 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	TOE1	Q96GM8	510 aa	Known RBP	4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	MAGEB10	Q96LZ2	347 aa	Predicted RBP	4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	PWWP2A	Q96N64	755 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	JAM3	Q9BX67	310 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	NCOA5	Q9HCD5	579 aa	Known RBP	4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	DTL	Q9NZJ0	730 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	MYOT	Q9UBF9	498 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	SIT1	Q9Y3P8	196 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857	TRAF6	Q9Y4K3	522 aa		4.56	□□□□□ -1.68
CNOT1-223	ENST00000628857		B4E1Z4	1266 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	CRTAM	O95727	393 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	ZSCAN22	P10073	491 aa	Predicted RBP	4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	GNAT1	P11488	350 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	AFF3	P51826	1226 aa	Known RBP	4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	NCKAP1L	P55160	1127 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	SQSTM1	Q13501	440 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	GPR19	Q15760	415 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	CR1L	Q2VPA4	569 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	FAM47C	Q5HY64	1035 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	MTDH	Q86UE4	582 aa	Known RBP	4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	TTLL6	Q8N841	843 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	KY	Q8NBH2	561 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	SMARCC2	Q8TAQ2	1214 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	SLC7A14	Q8TBB6	771 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	PIP4K2C	Q8TBX8	421 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	SH3TC2	Q8TF17	1288 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	RNPC3	Q96LT9	517 aa	Known RBP	4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	CELF4	Q9BZC1	486 aa	Known RBP	4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	IPPK	Q9H8X2	491 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	SLC52A2	Q9HAB3	445 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	RXFP1	Q9HBX9	757 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	INTS7	Q9NVH2	962 aa	Known RBP	4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	SFMBT1	Q9UHJ3	866 aa		4.55	□□□□□ -1.68
CNOT1-223	ENST00000628857	DSE	Q9UL01	958 aa		4.55	□□□□□ -1.68

Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms