RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 DBF4BQ8NFT6 615 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 ESR2Q92731 530 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 EMID1Q96A84 441 aaPredicted RBP17.15■□□□□ 0.34
PNKP-218ENST00000625299 MRPL38Q96DV4 380 aaKnown RBP17.15■□□□□ 0.34
PNKP-218ENST00000625299 VAT1LQ9HCJ6 419 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 ZMYM6O95789 1325 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 EMSYQ7Z589 1322 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 SALL3Q9BXA9 1300 aa17.15■□□□□ 0.34
PNKP-218ENST00000625299 GRXCR2A6NFK2 248 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 HAS3O00219 553 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 EIF3JO75822 258 aaKnown RBP17.14■□□□□ 0.33
PNKP-218ENST00000625299 CFBP00751 764 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 NR3C2P08235 984 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 MYCLP12524 364 aaPredicted RBP17.14■□□□□ 0.33
PNKP-218ENST00000625299 HIC1Q14526 733 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 EPC2Q52LR7 807 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 TIGD5Q53EQ6 642 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 FBXO11Q86XK2 927 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 YME1L1Q96TA2 773 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 RNF41Q9H4P4 317 aaPredicted RBP17.14■□□□□ 0.33
PNKP-218ENST00000625299 KAT14Q9H8E8 782 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 PXMP2Q9NR77 195 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 CTNNA3Q9UI47 895 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 MRPL11Q9Y3B7 192 aaKnown RBP17.14■□□□□ 0.33
PNKP-218ENST00000625299 CCDC171Q6TFL3 1326 aa17.14■□□□□ 0.33
PNKP-218ENST00000625299 RSPH10B2B2RC85 870 aa17.13■□□□□ 0.33
PNKP-218ENST00000625299 UPP2O95045 317 aa17.13■□□□□ 0.33
PNKP-218ENST00000625299 RSPH10BP0C881 870 aa17.13■□□□□ 0.33
PNKP-218ENST00000625299 PCP11498 1178 aaKnown RBP17.13■□□□□ 0.33
PNKP-218ENST00000625299 PUS10Q3MIT2 529 aaKnown RBP17.13■□□□□ 0.33
PNKP-218ENST00000625299 DGKHQ86XP1 1220 aa17.13■□□□□ 0.33
PNKP-218ENST00000625299 BANK1Q8NDB2 785 aa17.13■□□□□ 0.33
PNKP-218ENST00000625299 SPATA33Q96N06 139 aa17.13■□□□□ 0.33
PNKP-218ENST00000625299 NLRC5Q86WI3 1866 aa17.13■□□□□ 0.33
PNKP-218ENST00000625299 DCXO43602 365 aa17.12■□□□□ 0.33
PNKP-218ENST00000625299 CTSHP09668 335 aa17.12■□□□□ 0.33
PNKP-218ENST00000625299 HTRA4P83105 476 aaPredicted RBP17.12■□□□□ 0.33
PNKP-218ENST00000625299 GPM6BQ13491 265 aa17.12■□□□□ 0.33
PNKP-218ENST00000625299 ASPRV1Q53RT3 343 aa17.12■□□□□ 0.33
PNKP-218ENST00000625299 TCEAL5Q5H9L2 206 aa17.12■□□□□ 0.33
PNKP-218ENST00000625299 IQCA1Q86XH1 822 aa17.12■□□□□ 0.33
PNKP-218ENST00000625299 NEK9Q8TD19 979 aa17.12■□□□□ 0.33
PNKP-218ENST00000625299 MAF1Q9H063 256 aa17.12■□□□□ 0.33
PNKP-218ENST00000625299 C17orf102A2RUQ5 167 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 TRIM6-TRIM34B2RNG4 842 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 KDM4AO75164 1064 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 GGPS1O95749 300 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 PDE1AP54750 535 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 HSDL1Q3SXM5 330 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 SERINC5Q86VE9 423 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 SP7Q8TDD2 431 aaPredicted RBP17.11■□□□□ 0.33
PNKP-218ENST00000625299 ATP6V0A1Q93050 837 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 RILPL2Q969X0 211 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 SAMD11Q96NU1 681 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 CLDND1Q9NY35 253 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 LAMA4Q16363 1823 aa17.11■□□□□ 0.33
PNKP-218ENST00000625299 H3BNC9 293 aa17.1■□□□□ 0.33
PNKP-218ENST00000625299 ZNF213O14771 459 aa17.1■□□□□ 0.33
PNKP-218ENST00000625299 PPFIA4O75335 1185 aa17.1■□□□□ 0.33
PNKP-218ENST00000625299 PARP1P09874 1014 aaKnown RBP17.1■□□□□ 0.33
PNKP-218ENST00000625299 MRE11P49959 708 aa17.1■□□□□ 0.33
PNKP-218ENST00000625299 MKRN4PQ13434 485 aaPredicted RBP17.1■□□□□ 0.33
PNKP-218ENST00000625299 PLEKHG4Q58EX7 1191 aa17.1■□□□□ 0.33
PNKP-218ENST00000625299 CELF3Q5SZQ8 465 aaKnown RBP17.1■□□□□ 0.33
PNKP-218ENST00000625299 MYSM1Q5VVJ2 828 aa17.1■□□□□ 0.33
PNKP-218ENST00000625299 TMEM192Q8IY95 271 aa17.1■□□□□ 0.33
PNKP-218ENST00000625299 SEPT8Q92599 483 aa17.1■□□□□ 0.33
PNKP-218ENST00000625299 PABPC5Q96DU9 382 aaKnown RBP17.1■□□□□ 0.33
PNKP-218ENST00000625299 ZFP91Q96JP5 570 aaPredicted RBP17.1■□□□□ 0.33
PNKP-218ENST00000625299 JMJD4Q9H9V9 463 aa17.1■□□□□ 0.33
PNKP-218ENST00000625299 FAM50BQ9Y247 325 aa17.1■□□□□ 0.33
PNKP-218ENST00000625299 B4E1Z4 1266 aa17.09■□□□□ 0.33
PNKP-218ENST00000625299 RGS20O76081 388 aa17.09■□□□□ 0.33
PNKP-218ENST00000625299 HOXD8P13378 290 aaPredicted RBP17.09■□□□□ 0.33
PNKP-218ENST00000625299 UBA1P22314 1058 aaKnown RBP17.09■□□□□ 0.33
PNKP-218ENST00000625299 HOXA13P31271 388 aaPredicted RBP17.09■□□□□ 0.33
PNKP-218ENST00000625299 CCDC178Q5BJE1 867 aa17.09■□□□□ 0.33
PNKP-218ENST00000625299 ZSCAN10Q96SZ4 725 aaPredicted RBP17.09■□□□□ 0.33
PNKP-218ENST00000625299 PDCD2LQ9BRP1 358 aa17.09■□□□□ 0.33
PNKP-218ENST00000625299 AMNQ9BXJ7 453 aa17.09■□□□□ 0.33
PNKP-218ENST00000625299 IFIH1Q9BYX4 1025 aaKnown RBP17.09■□□□□ 0.33
PNKP-218ENST00000625299 NSUN3Q9H649 340 aaKnown RBP17.09■□□□□ 0.33
PNKP-218ENST00000625299 MLXIPQ9HAP2 919 aa17.09■□□□□ 0.33
PNKP-218ENST00000625299 MYO7AQ13402 2215 aa17.09■□□□□ 0.33
PNKP-218ENST00000625299 RALGAPA2Q2PPJ7 1873 aa17.08■□□□□ 0.33
PNKP-218ENST00000625299 TREHO43280 583 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 CSPG5O95196 566 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 SMIM10L2AP0DMW4 78 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 SMIM10L2BP0DMW5 78 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 HSD17B4P51659 736 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 MFAP1P55081 439 aaKnown RBP17.08■□□□□ 0.32
PNKP-218ENST00000625299 SP2Q02086 613 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 ZP2Q05996 745 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 CLUL1Q15846 466 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 KCNV1Q6PIU1 500 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 ENAHQ8N8S7 591 aaPredicted RBP17.08■□□□□ 0.32
PNKP-218ENST00000625299 IL31RAQ8NI17 732 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 TOP1MTQ969P6 601 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 C16orf70Q9BSU1 422 aa17.08■□□□□ 0.32
PNKP-218ENST00000625299 OSBPL7Q9BZF2 842 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms