RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 ZSCAN31Q96LW9 406 aaPredicted RBP13.27□□□□□ -0.29
LINC00539-204ENST00000608957 NOC4LQ9BVI4 516 aaKnown RBP13.27□□□□□ -0.29
LINC00539-204ENST00000608957 AGXT2Q9BYV1 514 aa13.27□□□□□ -0.29
LINC00539-204ENST00000608957 SLKQ9H2G2 1235 aaPredicted RBP13.27□□□□□ -0.29
LINC00539-204ENST00000608957 TRMT13Q9NUP7 481 aaKnown RBP13.27□□□□□ -0.29
LINC00539-204ENST00000608957 LAMA2P24043 3122 aaKnown RBP13.27□□□□□ -0.29
LINC00539-204ENST00000608957 KAT6AQ92794 2004 aa13.27□□□□□ -0.29
LINC00539-204ENST00000608957 LARGE1O95461 756 aa13.26□□□□□ -0.29
LINC00539-204ENST00000608957 CSF2RAP15509 400 aa13.26□□□□□ -0.29
LINC00539-204ENST00000608957 CCND2P30279 289 aa13.26□□□□□ -0.29
LINC00539-204ENST00000608957 TRAF1Q13077 416 aa13.26□□□□□ -0.29
LINC00539-204ENST00000608957 TYW1BQ6NUM6 668 aa13.26□□□□□ -0.29
LINC00539-204ENST00000608957 BRF1Q92994 677 aa13.26□□□□□ -0.29
LINC00539-204ENST00000608957 EMID1Q96A84 441 aaPredicted RBP13.26□□□□□ -0.29
LINC00539-204ENST00000608957 CTAGE1Q96RT6 745 aa13.26□□□□□ -0.29
LINC00539-204ENST00000608957 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.26□□□□□ -0.29
LINC00539-204ENST00000608957 LARP6Q9BRS8 491 aaKnown RBP13.26□□□□□ -0.29
LINC00539-204ENST00000608957 WNT8AQ9H1J5 351 aa13.26□□□□□ -0.29
LINC00539-204ENST00000608957 TPCN1Q9ULQ1 816 aa13.26□□□□□ -0.29
LINC00539-204ENST00000608957 MRVI1Q9Y6F6 885 aa13.26□□□□□ -0.29
LINC00539-204ENST00000608957 MYO9BQ13459 2157 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 WDR81Q562E7 1941 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 KLF18A0A0U1RQI7 1052 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 PIK3CDO00329 1044 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 ZBTB43O43298 467 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 ACRP10323 421 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 CYP2C9P11712 490 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 UBA1P22314 1058 aaKnown RBP13.25□□□□□ -0.29
LINC00539-204ENST00000608957 APOBRQ0VD83 1088 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 UBE2SQ16763 222 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 ME3Q16798 604 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 RTN1Q16799 776 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 TMEM240Q5SV17 173 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 MYSM1Q5VVJ2 828 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 WWC2Q6AWC2 1192 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 GPR153Q6NV75 609 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 INTS4Q96HW7 963 aaKnown RBP13.25□□□□□ -0.29
LINC00539-204ENST00000608957 HIPK3Q9H422 1215 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 FOXD4L1Q9NU39 408 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 SEC63Q9UGP8 760 aaKnown RBP13.25□□□□□ -0.29
LINC00539-204ENST00000608957 TELO2Q9Y4R8 837 aa13.25□□□□□ -0.29
LINC00539-204ENST00000608957 GOLGA8AA7E2F4 631 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 GOLGA8BA8MQT2 603 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 KPNA6O60684 536 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 GGPS1O95749 300 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 ZNF286BP0CG31 522 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 HOXD8P13378 290 aaPredicted RBP13.24□□□□□ -0.29
LINC00539-204ENST00000608957 CCL23P55773 120 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 HSDL1Q3SXM5 330 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 CELF3Q5SZQ8 465 aaKnown RBP13.24□□□□□ -0.29
LINC00539-204ENST00000608957 FAM109BQ6ICB4 259 aaPredicted RBP13.24□□□□□ -0.29
LINC00539-204ENST00000608957 NFRKBQ6P4R8 1299 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 PPTC7Q8NI37 304 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 SCLYQ96I15 445 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 RNPC3Q96LT9 517 aaKnown RBP13.24□□□□□ -0.29
LINC00539-204ENST00000608957 INPP4AQ96PE3 977 aaPredicted RBP13.24□□□□□ -0.29
LINC00539-204ENST00000608957 SEZ6LQ9BYH1 1024 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 RBM28Q9NW13 759 aaKnown RBP13.24□□□□□ -0.29
LINC00539-204ENST00000608957 MTMR10Q9NXD2 777 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 RTEL1Q9NZ71 1219 aa13.24□□□□□ -0.29
LINC00539-204ENST00000608957 NID2Q14112 1375 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 HAS3O00219 553 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 ICAM3P32942 547 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 ADD1P35611 737 aaKnown RBP13.23□□□□□ -0.29
LINC00539-204ENST00000608957 DDIT3P35638 169 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 ST3GAL1Q11201 340 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 PPIGQ13427 754 aaKnown RBP eCLIP13.23□□□□□ -0.29
LINC00539-204ENST00000608957 HIC1Q14526 733 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 BRDTQ58F21 947 aaPredicted RBP13.23□□□□□ -0.29
LINC00539-204ENST00000608957 FAM47CQ5HY64 1035 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 RASIP1Q5U651 963 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 GDF6Q6KF10 455 aaPredicted RBP13.23□□□□□ -0.29
LINC00539-204ENST00000608957 SYNE3Q6ZMZ3 975 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 ZNF365Q70YC5 407 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 HEATR3Q7Z4Q2 680 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 CCDC83Q8IWF9 413 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 DHX37Q8IY37 1157 aaKnown RBP13.23□□□□□ -0.29
LINC00539-204ENST00000608957 DEFB123Q8N688 67 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 SMARCC2Q8TAQ2 1214 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 PSTPIP2Q9H939 334 aa13.23□□□□□ -0.29
LINC00539-204ENST00000608957 CIZ1Q9ULV3 898 aaPredicted RBP13.23□□□□□ -0.29
LINC00539-204ENST00000608957 SPATA31C2B4DYI2 1134 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 STXBP3O00186 592 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 ADAMTS3O15072 1205 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 F2P00734 622 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 PSEN2P49810 448 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 RCAN1P53805 252 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 EVCP57679 992 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 CHMP4BP1P59074 171 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 PTPN11Q06124 597 aaPredicted RBP13.22□□□□□ -0.29
LINC00539-204ENST00000608957 LAMC2Q13753 1193 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 DGKDQ16760 1214 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 PCNX4Q63HM2 1172 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 KCNV1Q6PIU1 500 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 SESTD1Q86VW0 696 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 TMEM199Q8N511 208 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 NECAB1Q8N987 351 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 DHX38Q92620 1227 aaKnown RBP13.22□□□□□ -0.29
LINC00539-204ENST00000608957 CUL5Q93034 780 aa13.22□□□□□ -0.29
LINC00539-204ENST00000608957 GTF3C6Q969F1 213 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms