RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 LARGE2Q8N3Y3 721 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 DSCC1Q9BVC3 393 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 PSTPIP2Q9H939 334 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 DNAJC17Q9NVM6 304 aaKnown RBP9.41□□□□□ -0.9
CSMD1-216ENST00000602557 UTP6Q9NYH9 597 aaKnown RBP9.41□□□□□ -0.9
CSMD1-216ENST00000602557 TOM1L1O75674 476 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 HOXB7P09629 217 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 PDE6AP16499 860 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 KAZNQ674X7 775 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 BLIDQ8IZY5 108 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 ITKQ08881 620 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 DEPTORQ8TB45 409 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 KCNA3P22001 575 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 ZFP69BQ9UJL9 534 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 PCDHA7Q9UN72 937 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 ABCC10Q5T3U5 1492 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 CCDC195A0A1B0GUA6 201 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 M0QZ92 97 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 FTCDO95954 541 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 A1BGP04217 495 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 CTCFP49711 727 aaPredicted RBP9.41□□□□□ -0.9
CSMD1-216ENST00000602557 CTSWP56202 376 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 SF3B3Q15393 1217 aaKnown RBP9.41□□□□□ -0.9
CSMD1-216ENST00000602557 ARHGEF16Q5VV41 709 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 SH3GL2Q99962 352 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 TRAIPQ9BWF2 469 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 POLD4Q9HCU8 107 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 TRPC6Q9Y210 931 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 ACSL3O95573 720 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 ARHGAP4P98171 946 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 MAIP1Q8WWC4 291 aa9.41□□□□□ -0.9
CSMD1-216ENST00000602557 TESPA1A2RU30 521 aaPredicted RBP9.4□□□□□ -0.9
CSMD1-216ENST00000602557 TPP2P29144 1249 aaPredicted RBP9.4□□□□□ -0.9
CSMD1-216ENST00000602557 RNASELQ05823 741 aaKnown RBP9.4□□□□□ -0.9
CSMD1-216ENST00000602557 FOXD4Q12950 439 aaPredicted RBP9.4□□□□□ -0.9
CSMD1-216ENST00000602557 GRK7Q8WTQ7 553 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 MAPK13O15264 365 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 PLS3P13797 630 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 ATP5JP18859 108 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 PIK3CAP42336 1068 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 PPP2R5EQ16537 467 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 SKA2Q8WVK7 121 aaPredicted RBP9.4□□□□□ -0.9
CSMD1-216ENST00000602557 AP1M1Q9BXS5 423 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 SMYD2Q9NRG4 433 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 ART3Q13508 389 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 SYMPKQ92797 1274 aaKnown RBP9.4□□□□□ -0.9
CSMD1-216ENST00000602557 MED23Q9ULK4 1368 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 RGS12O14924 1447 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 ZNF189O75820 626 aaPredicted RBP9.4□□□□□ -0.9
CSMD1-216ENST00000602557 SCYL2Q6P3W7 929 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 RNF169Q8NCN4 708 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 YWHAGP61981 247 aaKnown RBP eCLIP9.4□□□□□ -0.9
CSMD1-216ENST00000602557 NLRX1Q86UT6 975 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 KIRREL3Q8IZU9 778 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 MMS19Q96T76 1030 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 TTC1Q99614 292 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 SIKE1Q9BRV8 207 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 GGT7Q9UJ14 662 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 ESRRAP11474 423 aaPredicted RBP9.4□□□□□ -0.9
CSMD1-216ENST00000602557 FLOT2Q14254 428 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 C19orf44Q9H6X5 657 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 TMEM51Q9NW97 253 aa9.4□□□□□ -0.9
CSMD1-216ENST00000602557 RASGRF2O14827 1237 aa9.4□□□□□ -0.91
CSMD1-216ENST00000602557 GYG2O15488 501 aa9.4□□□□□ -0.91
CSMD1-216ENST00000602557 SNUPNO95149 360 aaKnown RBP9.4□□□□□ -0.91
CSMD1-216ENST00000602557 OR52Z1P0C646 297 aa9.4□□□□□ -0.91
CSMD1-216ENST00000602557 FAM178BQ8IXR5 827 aa9.4□□□□□ -0.91
CSMD1-216ENST00000602557 NDE1Q9NXR1 346 aa9.4□□□□□ -0.91
CSMD1-216ENST00000602557 PPARGC1AQ9UBK2 798 aaKnown RBP9.4□□□□□ -0.91
CSMD1-216ENST00000602557 ARPP21Q9UBL0 812 aaPredicted RBP9.4□□□□□ -0.91
CSMD1-216ENST00000602557 MYBL1P10243 752 aa9.4□□□□□ -0.91
CSMD1-216ENST00000602557 NCF2P19878 526 aaPredicted RBP9.4□□□□□ -0.91
CSMD1-216ENST00000602557 SDR42E1Q8WUS8 393 aa9.4□□□□□ -0.91
CSMD1-216ENST00000602557 TCOF1Q13428 1488 aaKnown RBP9.4□□□□□ -0.91
CSMD1-216ENST00000602557 N4BP1O75113 896 aaKnown RBP9.4□□□□□ -0.91
CSMD1-216ENST00000602557 DAB1O75553 588 aa9.4□□□□□ -0.91
CSMD1-216ENST00000602557 SERPINB4P48594 390 aa9.4□□□□□ -0.91
CSMD1-216ENST00000602557 MAGOHP61326 146 aaKnown RBP9.4□□□□□ -0.91
CSMD1-216ENST00000602557 LRRC47Q8N1G4 583 aaKnown RBP9.4□□□□□ -0.91
CSMD1-216ENST00000602557 MAGOHBQ96A72 148 aaKnown RBP9.4□□□□□ -0.91
CSMD1-216ENST00000602557 TPD52L2O43399 206 aaKnown RBP9.39□□□□□ -0.91
CSMD1-216ENST00000602557 GSPT1P15170 499 aaKnown RBP9.39□□□□□ -0.91
CSMD1-216ENST00000602557 CCDC87Q9NVE4 849 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 LMNB1P20700 586 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 COPB1P53618 953 aaKnown RBP9.39□□□□□ -0.91
CSMD1-216ENST00000602557 PPM1KQ8N3J5 372 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 HAUS4Q9H6D7 363 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 GSTA4O15217 222 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 GNAT1P11488 350 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 LIG4P49917 911 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 POLR2FP61218 127 aaKnown RBP9.39□□□□□ -0.91
CSMD1-216ENST00000602557 TTBK2Q6IQ55 1244 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 SESTD1Q86VW0 696 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 FTOQ9C0B1 505 aaKnown RBP eCLIP9.39□□□□□ -0.91
CSMD1-216ENST00000602557 TRPC5Q9UL62 973 aaPredicted RBP9.39□□□□□ -0.91
CSMD1-216ENST00000602557 MAD1L1Q9Y6D9 718 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 UBTFL6P0CB48 400 aaPredicted RBP9.39□□□□□ -0.91
CSMD1-216ENST00000602557 MIS12Q9H081 205 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 TOM1O60784 492 aa9.39□□□□□ -0.91
CSMD1-216ENST00000602557 NUGGCQ68CJ6 796 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms